Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01483 ATGGCTAGACAGCGGCGATTCTCGGTACACCATCGCCACCATGGTGGGCACCACGGGAATGGCCACCAAAATCAGCATCCGACTCAGATGAATCCGAATGCTTCAGATCATTGCAACATGGCTACAACTGCTCAGCCCAATGCCGGAAACTGGGTCTACTGGCCCTCCCCAACCGGTGCAGGAGCCTCTTCCACCACATCGTCTGGTTTTCCAGTGGACTCATCGCCTCTGCATGCTGCTGATCGCTCTAATTCCTCACTGCAGAATCAGAACTATCCTCCACGAATCCCATCGGACCGGCGACAGGGATGGAAACCAGAGAAGAATTTGAAGTTTCTATTACAGAAGGTTTTGAAGCAAAGTGATGTGGGCAATTTGGGAAGAATTGTATTGCCAAAGAAAGAAGCAGAAACCCATCTCCCAGAACTGGAGGCAAGAGATGGGATTTCCATTGCCATGGAAGACATCGGAACTTCAAGAGTTTGGAATATGCGTTATAGGTATTGGCCAAACAATAAAAGCAGAATGTATCTCCTTGAAAATACAGGGGACTTTGTAAGAGCCAATGGACTTCAAGAAGGAGACTTCATCGTCATTTACTCCGACATAAAGTGTGGAAAATATATGATTCGAGGAGTGAAAGTACGGCAACCAGGATCGAAACCCGAGAGCAAAAGGCCGGGAAAATCACAGAGAAGCCACACGACTGCAGCTGGCAATGGGTCGTCACCTTCAGCAACAACCATCGCGACCCCGAAGAGACACTAA 768 48.7 MARQRRFSVHHRHHGGHHGNGHQNQHPTQMNPNASDHCNMATTAQPNAGNWVYWPSPTGAGASSTTSSGFPVDSSPLHAADRSNSSLQNQNYPPRIPSDRRQGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDIKCGKYMIRGVKVRQPGSKPESKRPGKSQRSHTTAAGNGSSPSATTIATPKRH* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15178731 15180583 + CsaV3_7G025720.1 Csa07g01483 537046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01483 255 MobiDBLite consensus disorder prediction 1 20 - -
Csa07g01483 255 Gene3D - 110 227 IPR015300 -
Csa07g01483 255 CDD BfiI_C_EcoRII_N_B3 112 213 - -
Csa07g01483 255 MobiDBLite consensus disorder prediction 231 255 - -
Csa07g01483 255 MobiDBLite consensus disorder prediction 1 43 - -
Csa07g01483 255 MobiDBLite consensus disorder prediction 21 43 - -
Csa07g01483 255 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 245 IPR044800 GO:0003700
Csa07g01483 255 MobiDBLite consensus disorder prediction 60 96 - -
Csa07g01483 255 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 245 - -
Csa07g01483 255 MobiDBLite consensus disorder prediction 216 255 - -
Csa07g01483 255 SUPERFAMILY DNA-binding pseudobarrel domain 113 208 IPR015300 -
Csa07g01483 255 MobiDBLite consensus disorder prediction 60 104 - -
Csa07g01483 255 SMART B3_2 114 216 IPR003340 GO:0003677
Csa07g01483 255 ProSiteProfiles B3 DNA-binding domain profile. 114 216 IPR003340 GO:0003677
Csa07g01483 255 Pfam B3 DNA binding domain 115 211 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03600 Csa-Chr6:29074924 Csa07g01483 Csa-Chr7:15178731 7.88E-17 dispersed
Csa07g01483 Csa-Chr7:15178731 Csa05g01482 Csa-Chr5:17061938 2.34E-11 dispersed
Csa07g01483 Csa-Chr7:15178731 Csa04g00592 Csa-Chr4:3908314 3.33E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32329 PF02362 B3 4.10E-18 CL0405 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01483 - - csv:101204282 494.197