Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01484 ATGGCGATTCTGAAGCTTTTTTCTCTCTGCATTTCCCTCTTCTTATTAATCAGAGCCCCTGTACGATGTGATTCCATACATTTCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCCTCCTCCTCCTCCTCCTCTTCTTTTTCTTCTGATGTTCAGCTTCTTTTGGGAAAGATTAGAGCTTCACTTGAAGGAGACACTCAAAACTTGCTTTTATCTTCATGGAATTACTCTGTTCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCACTACTGGAACCCCACTGGTCTGCACTGCTGCTTCTTCTCCACAATGGTCTAATCTCACTCTGTTCAAAGACCCTTCTCTTCATGTTCTCTCTCTGCAACTTCCATCTGCTAATCTTACTGGTTCGTTGCCTAAGGAGCTTGGTGAGTTCACTATGCTTCAAAGCCTCTATCTAAGTATAAACTCTTTGACTGGAACCATTCCACTTGAACTTGGTTACAGCTCCTCTCTTTCTGATATTGATTTGAGTAGCAATCTTTTAACGGGAGTTCTTCCACCTTCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGACTTCATGGCAATTCGTTATCTGGGTCTCTGCCGGAGCCGGCTTTACCAAACTCCACCTGTAGGAATCTGGAGGCTTTGGATTTAGGCAACAATCAGATTTCAGGTACTTTCCCTGAATTCGTTTCTAGATTTCCGGGTCTTAAAGAGCTTGATCTTGGGAAAAATTTGTTGTCTGGACAAATCCCTCAGAGCTTAGGCCAGTTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTAGTAACTCAAAATTTGGTGTTGAGGCTTTTGAAGGGAATAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAAGCTGTGCAGTACCTTCTCATTTGAGTTCAGGCGCCATTGCTGGCCTTGTTATTGGCTTGATGACTGGCACAGTGGTTTTAGCTTCGTTGCTTATTGGTTATATGCAAAACAAGAAGAAGAAGAGTAGTAGTGAGAGTGAAGATGAGAATGATGAAGGAGAAGATGAAGAAAATGGTGGCAGTGTCGGTGCAGGTGGTGAAGGAAAGCTCATTTTATTTGAGGGTGGTGAGAATCTGACATTGGATGATGTCTTGAATGCTACGGGGCAAGTTATGGAAAAAACAAGCTATGGCACTATATATAAGGCAAAGCTTGCTGATGGAGGGACCATTGCTCTCAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGCTTGTCTGTGATTAAACAATTGGGAAAGATTCGCCATGAGAATTTGATTCCTTTAAGAGCTTTCTATCAAGGAAAGAGAGGAGAAAAGCTCCTCATTTATGACTATCTGTCAATCCGAACTTTACATGATTTTCTACATGAATCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCATTAGGCATTGCCCGGGGATTAGCCCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGTAACATTAGATCGAAAAATGTGCTTGTGGATGATCACTCCTTTGCAGTGAGACTGACAGAGTTTGGGCTAGACAAGCTAATGATCCCATCAGTAGCTGACGAAATTGTCTCGCTGGCAAAATCAGATGGGTACAAGGCACCAGAGCTGCAACGGATGAAGAAATGCAATTCAAGAACAGATGTGTATGCATTTGGAATCTTATTATTGGAAATTCTGATTGGGAAGAAACCAGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATAGTGAAAGTGGCAGTTCTGGAGGAGACAACGATGGACGTTTTCGACGTGGAGGTTTTGAAAGGGATTAGAAGTCCAATGGAAGATGGAATTGTTCAGGCATTGAAGCTTGCAATGGGTTGCTGTGCTCCAGTGGCTTCAGTAAGACCTTCCATCGATGAAGTTGTGAAGCAGTTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACAGAAACAAGAAGTGAAAATGGTACCCCATTTTGA 2097 42.82 MAILKLFSLCISLFLLIRAPVRCDSIHFPSSSSSSSSSSSSSSSSSSSSSSFSSDVQLLLGKIRASLEGDTQNLLLSSWNYSVPLCQWRGLKWVFTTGTPLVCTAASSPQWSNLTLFKDPSLHVLSLQLPSANLTGSLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGVLPPSIWNLCDKLVSVRLHGNSLSGSLPEPALPNSTCRNLEALDLGNNQISGTFPEFVSRFPGLKELDLGKNLLSGQIPQSLGQLELEKLNLSNNNFSGILPVFSNSKFGVEAFEGNSPGLCGEPLKSCAVPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKKSSSESEDENDEGEDEENGGSVGAGGEGKLILFEGGENLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLSIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNIRSKNVLVDDHSFAVRLTEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSIVKVAVLEETTMDVFDVEVLKGIRSPMEDGIVQALKLAMGCCAPVASVRPSIDEVVKQLEENRPRNRSALYSPTETRSENGTPF* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15185546 15195473 + CsaV3_7G025730.1 Csa07g01484 537047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01484 698 MobiDBLite consensus disorder prediction 678 698 - -
Csa07g01484 698 Gene3D Phosphorylase Kinase; domain 1 383 473 - -
Csa07g01484 698 ProSiteProfiles Protein kinase domain profile. 397 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01484 698 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 40 698 - -
Csa07g01484 698 Gene3D Transferase(Phosphotransferase) domain 1 476 691 - -
Csa07g01484 698 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 40 698 - -
Csa07g01484 698 SUPERFAMILY Protein kinase-like (PK-like) 403 674 IPR011009 -
Csa07g01484 698 MobiDBLite consensus disorder prediction 350 375 - -
Csa07g01484 698 MobiDBLite consensus disorder prediction 29 52 - -
Csa07g01484 698 Pfam Leucine rich repeat 222 281 IPR001611 GO:0005515
Csa07g01484 698 Gene3D Ribonuclease Inhibitor 196 315 IPR032675 -
Csa07g01484 698 Gene3D Ribonuclease Inhibitor 55 195 IPR032675 -
Csa07g01484 698 MobiDBLite consensus disorder prediction 679 698 - -
Csa07g01484 698 SUPERFAMILY L domain-like 69 288 - -
Csa07g01484 698 Pfam Protein tyrosine and serine/threonine kinase 401 673 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00416 Csa-Chr4:2548355 Csa07g01484 Csa-Chr7:15185546 3.34E-64 dispersed
Csa05g00485 Csa-Chr5:3151947 Csa07g01484 Csa-Chr7:15185546 1.39E-52 dispersed
Csa07g01484 Csa-Chr7:15185546 Csa05g00862 Csa-Chr5:6592954 3.92E-17 dispersed
Csa07g01484 Csa-Chr7:15185546 Csa01g02093 Csa-Chr1:18117705 2.39E-80 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78493 PF07714 PK_Tyr_Ser-Thr 4.20E-25 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01484 - - csv:101203796 1278.46