Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01499 ATGAGTTGCTTTCCATGTTTTTCATCTCATGGGAAAGCAACAAAAAGAGCAAAGAGTGGCAGAAGGGAACAATCTGTTTCATTACATTCACGTAGTGGTAAACATCAACAACAACATCAACCACCTCCACAACAACATCACCATCCTGCTCCTGCTCCTGCTCCTCCTCCTCGTCCTACTCCTCCAGAAAATCCAAAAGCAAACCCTGTGCAAAAGGAAGCTGTAGAGAAAGAGAAAGAGAAAGAGAAAGAGAGAGAGAATGAGATTGGGGAAAAGAATAACATTGCAGCACAAACATTCACTTTTCGAGAGTTGGCCACTGCTACAAAGAATTTCCGTCAAGAATGTCTCATTGGTGAAGGAGGTTTTGGGAGAGTTTATAAAGGCAGACTCGATAAAACTAACCAGGTAGTGGCAGTGAAGCAGCTGGATAGAAATGGATTGCAAGGGAACAGAGAGTTTCTTGTGGAAGTTTTGATGCTAAGCCTTTTACACCATCAAAACCTTGTCAATCTCATTGGATATTGTGCTGATGGTGATCAAAGGCTCTTGGTCTATGAGTACATGCCTTTGGGATCTTTAGAAGATCATCTGCTAGATCTTCCATTTGAAAGGAAGGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCACAAGGGCTGGAGTACTTGCATGATAAAGCCAACCCACCAGTGATATATAGAGACTTGAAAGCATCAAACATCCTATTGGACAATGATTTCAATGCAAAGCTGTCAGATTTCGGACTTGCAAAGCTTGGTCCTGTTGGGGACAAATCCCATGTTTCCTCCAGAGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAGAGAACTGGCCAACTGACTCCGAAATCTGATGTCTATAGCTTTGGAGTTGTCTTATTGGAACTCATCACTGGCAAGAGAGTTATTGACAACACTCGTCCAGCTAAACAACAAAACTTGGTCGCTTGGGCATATCCAATATTTAAGGAACCAGCAAGATTCAAGGAGTTGGCAGATCCTCTTCTTGGTGGAGACTTCCCTGTGAGGGGTCTGAACCAAGCGGTTGCGGTTGCGGCCATGTGCCTTCATGAGGAAGCAACAGCCCGACCATTGATCAGTGACGTCGTCACTGCTCTCAGCTTCTTGGGAGCAGAAACCACGCATTCATCACCGTCCTCATCGTCAGGTGATGTCCCATCACCAGTTGATGACCAAGATCTTATCAATCTATCCAACAAACCCGTCGACTATTTTCACGACGACGAAACAGATGAGGCACGCCAACGAGCAGTCGCCGAAGCCATCGAATGGGGTGCAACGTCCAAGCAAAATGCTGCTGCTTCACGCCCGGGAAGTTATTCTTCCTTGTAA 1392 45.4 MSCFPCFSSHGKATKRAKSGRREQSVSLHSRSGKHQQQHQPPPQQHHHPAPAPAPPPRPTPPENPKANPVQKEAVEKEKEKEKERENEIGEKNNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGRLDKTNQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDLPFERKALDWGTRMKVGLGAAQGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDKSHVSSRVMGTYGYCAPEYQRTGQLTPKSDVYSFGVVLLELITGKRVIDNTRPAKQQNLVAWAYPIFKEPARFKELADPLLGGDFPVRGLNQAVAVAAMCLHEEATARPLISDVVTALSFLGAETTHSSPSSSSGDVPSPVDDQDLINLSNKPVDYFHDDETDEARQRAVAEAIEWGATSKQNAAASRPGSYSSL* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15365200 15368936 + CsaV3_7G025880.1 Csa07g01499 537062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01499 463 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 40 452 - -
Csa07g01499 463 Coils Coil 72 92 - -
Csa07g01499 463 MobiDBLite consensus disorder prediction 1 92 - -
Csa07g01499 463 MobiDBLite consensus disorder prediction 393 415 - -
Csa07g01499 463 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Csa07g01499 463 Pfam Protein kinase domain 114 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01499 463 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
Csa07g01499 463 Gene3D Phosphorylase Kinase; domain 1 77 188 - -
Csa07g01499 463 PANTHER OS07G0668900 PROTEIN 40 452 - -
Csa07g01499 463 ProSiteProfiles Protein kinase domain profile. 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01499 463 MobiDBLite consensus disorder prediction 70 91 - -
Csa07g01499 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
Csa07g01499 463 SUPERFAMILY Protein kinase-like (PK-like) 98 398 IPR011009 -
Csa07g01499 463 SMART serkin_6 112 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01499 463 MobiDBLite consensus disorder prediction 393 407 - -
Csa07g01499 463 MobiDBLite consensus disorder prediction 44 66 - -
Csa07g01499 463 CDD STKc_IRAK 118 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g00794 Csa-Chr6:6377052 Csa07g01499 Csa-Chr7:15365200 3.31E-174 dispersed
Csa06g01695 Csa-Chr6:14910133 Csa07g01499 Csa-Chr7:15365200 7.25E-144 dispersed
Csa06g01959 Csa-Chr6:17687348 Csa07g01499 Csa-Chr7:15365200 4.58E-152 dispersed
Csa07g01499 Csa-Chr7:15365200 Csa05g00641 Csa-Chr5:4259160 2.08E-169 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78494 PF00069 Pkinase 5.10E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01499 - - csv:101222872 831.247