Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01531 ATGGAAAACACTAAGCTTTCTTTAGCACTCTTTGCCACTTTACTCCTCACAAATGCTATTATTGTTAGAGCAAATTCTAATGAAAATGGTGTCATGAATAATATTCTGAGTGTTATAGAAACGTCATGTGCCATTACTCTTTATCCTCAACTGTGTCACTCAACAATATCCTCCATCCTTGGTACATCTAATTTGTTGAGTTTGAAAGATATCGTTGAACTGTCATTGAGTGTTGCTATGGATGCAGCTAAGCTTAACAATGAAAACATCAAAAAACTTTCGATGTCCGGTAACATAGTTGGTAAACGAGACAGGATTGCTCTTCATGATTGTGTCAAAACAACCGACAGGACCATTTATGAGCTTGACAAGGCTATACAGGATTTTTCTGAGTATCCGAACAAGAAATCTCTTGCTTCGTATGCCGATGACCTCAAAACTTTTCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTATCCCATGACAAAACAGAGAAAAGGGTTTTGAGACTTATTGAGAACACACATAATCAAGTGACGAAGTTGTGTAGTAATGCATTGGCTTTGGTTAAAAAATTGACAACAGACGTTGCCTTAACAGATGAGAAAAGCTTGGTGGTCCATGACTTTCCTTATAAGATAACTTCAATATCCTCCCAAATAGATGACCCCAAAATTGTACTCTTTTCCAATCAGGAGGATGGTGAGAGTAGAAGAAGGGAGGATTTGGAAAATGGAATAAAGTGGCCAGAATGGATGTCAATCCAAGACCAGATGCTTTTAGACTCATCGTCAGAAGAGGCGGCGGATGTGGTGGTGGCGGCGGATGGAACCGGAAATTATAAAACGGTGTCGGAGGCAGTGAAGGCGGCGCCGAGTAAGAACAGCAGATATATAATAAAAATAAAGGCTGGAGTTTACAGGGAAAATGTTGATGTACCAAGCAGTAAACGGAATATTATGTTTTGGGGAGATGGAAGAAGCAACACCATTATCACTGCCGATAGAAGTCATGGGAGTGGCTGGTCAACCTTCAATTCCGCCACAGTCGTTGCTGTGGGGGACGGATTCTTAGCTCGAGACATAACCTTTCAAAACACAGCCGGATCAGCCAACGGCCAAGCTGTAGCCCTTCGTGTTGGCTCAGATCACTCAGCCTTCTACCGTTGTAGCATGCTTGCCTATCAAGACACTCTCTACGTCCACTCAAACCGTCAATTCTTCGTCAAGTGCGTTGTAGCAGGAACAGTCGACTTCATCTTTGGAAACGCAGCAGCCGTAATCCAAAACTCTGATCTCACCCCTCGCAAACCAGGCCCTAACCAAAATAACATGGTGACAGCACAATCAAGAACCGACTTGAATCAAAACACGGGAATCGTTATCCAAAAGTGTAGGATAAAAGCGACGTCAGACTTGGAGCCTGTGATAAAAGAATTCCCAAGCTTCCTTGGGAGACCATGGGAGGAATATGCTAGGGTTGTGGTAATGCAAACGTCAATAACCAATGTGATAGACAAAGAGGGGTGGTCCACATGGAATGGTGACATAAAGAAACCCTACTTTGCAGAATATGACAACAATGGAGCTGGTGCTGATACTTCTGGTAGAGTGTCATGGTCTCTTGTTATTAATGAAGCTGAAGCTAAGACCTTCACGGCTGAACCATTCATTGACGGTGCAGGTTGGCTTCCATCTACTGGCTTCCCTTATCAGCTTGGTCTCTATAACTGA 1746 42.84 MENTKLSLALFATLLLTNAIIVRANSNENGVMNNILSVIETSCAITLYPQLCHSTISSILGTSNLLSLKDIVELSLSVAMDAAKLNNENIKKLSMSGNIVGKRDRIALHDCVKTTDRTIYELDKAIQDFSEYPNKKSLASYADDLKTFLSSAITNQVTCLDGLSHDKTEKRVLRLIENTHNQVTKLCSNALALVKKLTTDVALTDEKSLVVHDFPYKITSISSQIDDPKIVLFSNQEDGESRRREDLENGIKWPEWMSIQDQMLLDSSSEEAADVVVAADGTGNYKTVSEAVKAAPSKNSRYIIKIKAGVYRENVDVPSSKRNIMFWGDGRSNTIITADRSHGSGWSTFNSATVVAVGDGFLARDITFQNTAGSANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVKCVVAGTVDFIFGNAAAVIQNSDLTPRKPGPNQNNMVTAQSRTDLNQNTGIVIQKCRIKATSDLEPVIKEFPSFLGRPWEEYARVVVMQTSITNVIDKEGWSTWNGDIKKPYFAEYDNNGAGADTSGRVSWSLVINEAEAKTFTAEPFIDGAGWLPSTGFPYQLGLYN* 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15672436 15679758 - CsaV3_7G026200.1 Csa07g01531 537094
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01531 581 Pfam Pectinesterase 274 564 IPR000070 GO:0030599|GO:0042545
Csa07g01531 581 SMART PMEI_2 34 193 IPR006501 GO:0004857
Csa07g01531 581 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 14 578 - -
Csa07g01531 581 SUPERFAMILY Pectin lyase-like 271 578 IPR011050 -
Csa07g01531 581 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 199 IPR035513 -
Csa07g01531 581 CDD PMEI-like_3 41 199 - -
Csa07g01531 581 PANTHER PECTINESTERASE 14 578 - -
Csa07g01531 581 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 198 IPR006501 GO:0004857
Csa07g01531 581 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 198 IPR035513 -
Csa07g01531 581 Gene3D - 268 579 IPR012334 -
Csa07g01531 581 Pfam Plant invertase/pectin methylesterase inhibitor 38 193 IPR006501 GO:0004857
Csa07g01531 581 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02798 Csa-Chr3:26823594 Csa07g01531 Csa-Chr7:15672436 0 dispersed
Csa05g00388 Csa-Chr5:2507428 Csa07g01531 Csa-Chr7:15672436 1.88E-15 dispersed
Csa07g01531 Csa-Chr7:15672436 Csa07g02304 Csa-Chr7:21412382 0 dispersed
Csa07g01531 Csa-Chr7:15672436 Csa07g01533 Csa-Chr7:15682775 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01531 K01051 - csv:101221055 1131.32