Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01533 ATGGAAAACAATAAACTTTCACTCGCTCTCTTAGCTATTTTACTCCTCACAAATGCTATTGTTGTTAGAGCTAATTCTAATGAAAATAGTGTCATAGAAACCTCATGTGCCATTACTCTTTATCCTCAACTCTGTCATTCAACAATATCCTCCATCGTTGGAACGTCTAATTTGTTGAGTTTGAAAGATATTTTTGAAGTGTCATTGAGTGTTGCTATGGATGCAGCTAAGCATAACAATAAAAACATAAAAAAACTTATGGTGTCCACTAACAATGTTAGTAAACGAGACAAGATTGGTCTTCATGATTGTGTTGAAACAACTGACAGGACCATTTATGAGCTTGGGAAAGCTATAGAGGTCTTTCGTGAGTATCCGAACAAGAGATCTCTTACTTTGTACGCCGATGACCTCAAAACCTTCCTCAGTTCTGCCATTACTAATCAGGTGACTTGTTTGGATGGATTATCACATGACAAAACAGAGAAAAGGGTTTTGAGACTTATTGAGAACGCACATATTCATGTGACAAAGTTGTGTAGTAATGCATTGGCTTTGGTTCAAAAATTGACAACAGACATTGCCATAACAGATGAGAAAAGCTTGGTGGTCCATGATTTCCCTTATAAGATAACTTCAATACCCTCCCAAATGGATGACCCCAAAATTGTACTCTTTTCCAACCAGGAGGAAGATGAGAATAGAAGAAGGGAGGAGTTAGAAGATGGAATAAAGTGGCCAAAGTGGATGTCAATCGAAGACCAGAAGCTTTTGGAATCATCATCAGAAGCAGCAGCGGAGGCTGTGGTGGCGGCGGATGGAAGTGGAAATTATAAAACGGTGGCGGAGGCGGTGGCGGCAGCTCCGAGTAAGAACAGCAAAAGATATATAATAAAAATAAAGGCTGGAGAGTACTGGGAAAATGTGGATGTACCAAGCAGTAAAAGGAATATTATGTTTTGGGGAGATGGAAGATCCAACACCAAAATCATATCTAATAGAAGTCATGGAACTGGCTGGTCAACCTTCAAATCCGCCACACTTGCTGCGGTGGGGGATGGTTTTTTAGCTCGAGACATAACCTTTCAAAACAAAGCCGGAGCAGCCAACGGCCAAGCTGTAGCTCTCCGTGTTGGCTCAGATCACTCGGCCTTCTACCGATGTAGCATGCTTGCCTACCAAGACACTCTCTACGTTCACTCGAACCGTCAATTCTTCGTCAACTGCATTGTAGCAGGCACAGTCGATTTCATCTTTGGAAATGCAGCAGCCGTATTCCAAAACTCTGACATCACCCCTCGCAAACCAGGGCCTAGTCAAAGGAACATGGTCACAGCACAATCAAGAACCGACATTAATCAAAACACGGGTATCGTCATCCAAAAGTGTAGGATAAAAGCAACGTCAGACTTGGAGCCTGTGATAGAAGAATTCCCAAGCTTTCTCGGGAGACCATGGGAAGAATATGCTAGAGTTGTGGTAATGCAAACGACAATAAGCAATGTGATAGACAAAGAGGGGTGGTCCACATGGAATGGCCAAAGAAAGTCACCATACTATGCGGAATATGATAATAATGGAGCTGGAGCCGATATTTCTGGTAGAGTGCCATGGTCTCTTGTTATTGATGAGGCTCAAGCTAAGACTTTTACGGCTGGACCATTTATTGGTGGAGCTGATTGGCTTTCATCTACTGGCTTTCCCTATCAGCTTAGTCTCTATAAATGA 1728 42.25 MENNKLSLALLAILLLTNAIVVRANSNENSVIETSCAITLYPQLCHSTISSIVGTSNLLSLKDIFEVSLSVAMDAAKHNNKNIKKLMVSTNNVSKRDKIGLHDCVETTDRTIYELGKAIEVFREYPNKRSLTLYADDLKTFLSSAITNQVTCLDGLSHDKTEKRVLRLIENAHIHVTKLCSNALALVQKLTTDIAITDEKSLVVHDFPYKITSIPSQMDDPKIVLFSNQEEDENRRREELEDGIKWPKWMSIEDQKLLESSSEAAAEAVVAADGSGNYKTVAEAVAAAPSKNSKRYIIKIKAGEYWENVDVPSSKRNIMFWGDGRSNTKIISNRSHGTGWSTFKSATLAAVGDGFLARDITFQNKAGAANGQAVALRVGSDHSAFYRCSMLAYQDTLYVHSNRQFFVNCIVAGTVDFIFGNAAAVFQNSDITPRKPGPSQRNMVTAQSRTDINQNTGIVIQKCRIKATSDLEPVIEEFPSFLGRPWEEYARVVVMQTTISNVIDKEGWSTWNGQRKSPYYAEYDNNGAGADISGRVPWSLVIDEAQAKTFTAGPFIGGADWLSSTGFPYQLSLYK* 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 15682775 15687248 - CsaV3_7G026220.1 Csa07g01533 537096
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01533 575 SMART PMEI_2 27 186 IPR006501 GO:0004857
Csa07g01533 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 191 IPR006501 GO:0004857
Csa07g01533 575 CDD PMEI-like_3 34 192 - -
Csa07g01533 575 Pfam Pectinesterase 268 558 IPR000070 GO:0030599|GO:0042545
Csa07g01533 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 190 IPR035513 -
Csa07g01533 575 PANTHER PECTINESTERASE 26 571 - -
Csa07g01533 575 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 3 26 571 - -
Csa07g01533 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 192 IPR035513 -
Csa07g01533 575 Pfam Plant invertase/pectin methylesterase inhibitor 31 186 IPR006501 GO:0004857
Csa07g01533 575 ProSitePatterns Pectinesterase signature 2. 411 420 IPR033131 -
Csa07g01533 575 Gene3D - 261 573 IPR012334 -
Csa07g01533 575 SUPERFAMILY Pectin lyase-like 263 570 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01533 Csa-Chr7:15682775 Csa07g02304 Csa-Chr7:21412382 0 dispersed
Csa07g01531 Csa-Chr7:15672436 Csa07g01533 Csa-Chr7:15682775 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01533 K01051 - csv:101220821 1112.44