Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa07g01568 | ATGCCCGACGACTTGGATCTTCCTGACCAAACTGTTCCTCTCAAGGTTGGTGAGGAGAAGGAGATTGGAAATCAAGGCTTGAAAAAGAAGCTTCTTAAGGAAGGTGAAGGATGGGTTACTCCAGAAAGTGGCGATGAGGTTGAAGTTCACTATACTGGGACTTTGCTTGATGGTACTCAGTTTGATTCTAGCCGCGATCGTGGAACCCCGTTCAAGTTTACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATTTGGGTATCAAAACAATGAAGAAAAATGAAAAAGCTCTTTTTACCATTCCTCCTGATCTGGCATATGGTGAATCTGGCTCCCCACCAACCATTCCTCCTAGTGCGACATTGCAGTTCGATGTTGAGTTACTATCTTGGACAAGCGTTAAGGACATATGTAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGGACAAATGGGAGAATCCAAAGGACCTTGATGAAGTGCTAGTAAATTTTGAAGCTAAGCTAGAAGATGGAACACTTATTGCAAAAGCTGATGGAGTGGAATTCACTGTTGCGGATGGTTACTTTTGCCCTGCACTTGCAAAGGCTGTAAAAACCATGAAGTTAGGTGAAAAGGCACTTCTCACGGTGAAGCCACAATATGGGTTCGGGGAGAAAGGTAAATCTGCCCGTGGCAATGAAGGTGCAGTTCCACCAAATGCATCTCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAGAAGGTCATCAAGAAAATTCTGAAAGAAGGAGAAGGTTATGAGAAGCCAAATGATGGAGCTATTGTCAAAGTGAAATTGATTGGGAAGTTGGGAGATGGCAAGATATTTTTGAGGAAGGGACACGAGGATGGTGAAGAGCCATATGAGTTCAAAACAGATGAAGAACAAGTGATTGATGGCCTTGACAAAGCTGTGGTTACTATGAAGAAAGGTGAGATAGCCCTGCTGACAATAGCACCAGAGTATGCTTTTGGTTCGTCTGAGTCACAACAGGATTTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTACGAGGTTGAGCTGGTGGCTTTTGACAAGGAGAAAGAGTCATGGGATATGAATAACCAGGAAAAGATTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTTAAGTCTGGAAAATTTGCCAGAGCTTCCAAGAGATATGAGAAGGCTGTGAAGTTCATTGAATACGATTCTTCATTTAGCGAAGAAGAGAAAAAGCAGGCAAAGGCATTGAAAGTTGCATGCAATTTGAACAATGCAGCGTGTAAATTGAAGCTAAAGCTGTACAACGAGGCAGAGAAATTGTGCACCAAGGTGCTGGAACTTGAGAGTTCGAACGTCAAGGCTCTCTATAGAAGGGCTCAAGCATATATCCAACTAGCTGATTTGGACTTGGCTGAATTTGACATAAAGAAGGCTCTCGATATAGATCCGAATAACAGGGATGTGAAATTGGAATACAAAACTCTGAAGGAGAAGGTGAAGGAGTACAATAAAAAAGATGCCAAGTTTTACGGTAACATGTTTGCCAAAATGAAGAAAGTAGAATCTGCATAA | 1626 | 42.13 | MPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFEAKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARGNEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKLGDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQQDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESSNVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKKVESA* | 542 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 7 | 16107814 | 16112369 | - | CsaV3_7G026570.1 | Csa07g01568 | 537131 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa07g01568 | 541 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 44 | 132 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | SUPERFAMILY | TPR-like | 375 | 535 | IPR011990 | GO:0005515 | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 259 | 368 | - | - | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 12 | 256 | - | - | |
| Csa07g01568 | 541 | Gene3D | - | 136 | 249 | IPR046357 | GO:0003755 | |
| Csa07g01568 | 541 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 155 | 245 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 39 | 129 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 271 | 367 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | SUPERFAMILY | FKBP-like | 136 | 252 | - | - | |
| Csa07g01568 | 541 | SUPERFAMILY | FKBP-like | 21 | 136 | - | - | |
| Csa07g01568 | 541 | SMART | tpr_5 | 387 | 420 | IPR019734 | GO:0005515 | |
| Csa07g01568 | 541 | SMART | tpr_5 | 436 | 469 | IPR019734 | GO:0005515 | |
| Csa07g01568 | 541 | SMART | tpr_5 | 470 | 503 | IPR019734 | GO:0005515 | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 369 | 540 | - | - | |
| Csa07g01568 | 541 | Pfam | Tetratricopeptide repeat | 470 | 503 | IPR001440 | GO:0005515 | |
| Csa07g01568 | 541 | SUPERFAMILY | FKBP-like | 252 | 387 | - | - | |
| Csa07g01568 | 541 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 160 | 249 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 259 | 368 | - | - | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 369 | 540 | - | - | |
| Csa07g01568 | 541 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 12 | 256 | - | - | |
| Csa07g01568 | 541 | Gene3D | - | 16 | 135 | IPR046357 | GO:0003755 | |
| Csa07g01568 | 541 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 277 | 370 | IPR001179 | GO:0003755 | |
| Csa07g01568 | 541 | Gene3D | - | 250 | 371 | IPR046357 | GO:0003755 | |
| Csa07g01568 | 541 | ProSiteProfiles | TPR repeat profile. | 470 | 503 | IPR019734 | GO:0005515 | |
| Csa07g01568 | 541 | Coils | Coil | 503 | 523 | - | - | |
| Csa07g01568 | 541 | Gene3D | Tetratricopeptide repeat domain | 373 | 530 | IPR011990 | GO:0005515 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa03g01584 | Csa-Chr3:11754826 | Csa07g01568 | Csa-Chr7:16107814 | 0 | dispersed | |
| Csa03g02189 | Csa-Chr3:19017773 | Csa07g01568 | Csa-Chr7:16107814 | 8.40E-11 | dispersed | |
| Csa03g02900 | Csa-Chr3:27700625 | Csa07g01568 | Csa-Chr7:16107814 | 3.85E-10 | dispersed | |
| Csa04g01565 | Csa-Chr4:15122163 | Csa07g01568 | Csa-Chr7:16107814 | 4.31E-67 | dispersed | |
| Csa06g00125 | Csa-Chr6:828520 | Csa07g01568 | Csa-Chr7:16107814 | 1.09E-07 | dispersed | |
| Csa06g01163 | Csa-Chr6:9762144 | Csa07g01568 | Csa-Chr7:16107814 | 3.07E-11 | dispersed | |
| Csa07g00598 | Csa-Chr7:4359222 | Csa07g01568 | Csa-Chr7:16107814 | 1.67E-11 | dispersed | |
| Csa07g01568 | Csa-Chr7:16107814 | Csa07g01569 | Csa-Chr7:16113398 | 7.87E-06 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa07g01568 | K09571 | - | csv:101214513 | 1028.47 |