Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01609 ATGGACAAGCCTGTCAATATTGTTGTTGGTTCTCAAATATGGGTGGGAGATATAGATTCTGTTTGGATTGATGGACTCGTACTGAACATCAATGGGGAAGATGCTGAGATTCAAACTAGTGATGGGAGGCAGGTGGTTGTAAAAATGTCAAATCTTTATCCAAGGGACGCAGAAGCTCCTGCTACTGGAATTGACGACATGACAAGAATGTCATATTTGAATGAGCCTGGGTTGCTGCATAATTTGGCAATCAGATATGCAATAAATGAAATTTATACTTATACTGGAAACATTCTTATTGCCATCAACCCATTCCAAAGCATTTCAAGTCTGTATGATGCACATGTGATGGAGAAGTACAAGGGGGCACCAATTGGGGAGCTGAAGCCGCATGTTTTTGCAATTGCTGATGTTGCATATAGGGCTATGATAAATTATGGGAAAAGCAATTCCATTCTGGTAAGTGGTGAAAGTGGGGCTGGTAAGACTGAAACCACCAAAATGCTTATGTGTTACCTTGCATTTTTGGGCGGCCATGCTGCATCTGAAGGACGAACTGTTGAACAACAAGTTCTAGAATCGAATCCAGTTCTTGAAGCTTTTGGCAATGCAAAAACAGTGAGAAACAATAATTCAAGCCGGTTTGGGAAATTTGTTGAGATCCAATTCGACAAGAAGGGAAGAATATCAGGAGCTGCCATCAGAACTTATCTTCTTGAGAGATCACGGGTTTGTCAAATATCAGACCTTGAGCGCAACTATCATTGCTTTTACCTTCTCTGTGCAGCTCCACCTCAGGAGAGAGAGAGATATAAGCTGGGAAATCCAAAATCATTTCACTATCTAAACCAATCAAATTGTTATGAACTGGCTGGTGTGAATGATGCCCACGATTATCTTGCGACAAAGAGAGCCATGGATATTGTTGGAATAGGTGAACAAGAGCAGGATGCAATTTTCAGAGTTGTGGCTGCAATTCTCCATCTGGGTAATATTGAATTTGCAAAAGGAGAAGAGTCTGATTCATCATTTGTAAAAGATGAAGAATCAAAATTTCATCTTCACATGACAGCAGAGCTTCTCATGTGTGATCCCAATGCATTAGAAGATGCTCTTTGCAAGCGCATGATGGTTACACCGGAGGAAGTCATCAAGAGAAGTCTTGATCCGCATGGTGCAACAGTTAGCAGGGATGGATTAGCCAAGACAATATACTCCCGTTTGTTTGACTGGTTGGTAGATAAAATCAATGTATCCATCGGACAAGATCCTTGCTCGAAGTATCTGATTGGAGTACTTGATATTTATGGTTTTGAGAGCTTTCAAACAAATAGTTTTGAGCAATTCTGCATCAATTACACAAATGAAAAGCTGCAGCAACATTTCAACCAGCACGTATTCAAGATGGAGCAAGAAGAATATGTAAAAGAGGAAATTGATTGGAGCTACATTGAATTTGTTGATAATCAAGATGTCCTTGATCTGATTGAGAAGAAGCCAGGTGGAATCATTCCTCTTCTTGATGAAGCTTGCATGTTCCCAAAATCAAATCATGAAACATTTTCACAAAAGCTATATCAGACCTTCAAAAATCATAAACGCTTCACCAAGCCAAAATTGGCCCGCTCAGATTTTACGATTGTTCATTATGCTGGAGATGTTCTATATCAGTCAGATCAGTTTCTAGACAAAAATAAAGATTATGTTGTCTCTGAACATCAAGATTTGTTAAGTGCTTCAAAATGTGCTTTTGTCGGTGGTCTCTTCTCTCCTCATCCTGAGGAGACGGCCAAATCATCAAAGTTTTCTTCAATTGGCTCTCGTTTTAAGTTACAACTACAGCAGTTGATGGAAACGTTAAATTCAACCCAACCCCACTATATAAGATGCGTGAAGCCCAATACTGTTCTACAACCAGCCATCTTTGAGAATGCTACTGTTATGCAACAATTACGCTCTGGAGGCGTTTTGGAGGCAATTAGAATCAAATGTGCAGGATACCCTACTCATAGAACATTTTCCGAATTTTTATCTCGATTCGGAATTCTTGCACCCGAGGTATTGGAAGGGGACTATGAAGAGAAGGCTGCGTGCGAAAAGATTCTAGAGAAGATGGGACTTAAAGGTTATCTGATAGGGCAATCAAAAATTTTCCTGAGGGGTAATTTGATGGCCGAACTAGATGCACGAAGAACAGGAATACATTGTGCTGCTGCTGTAGTTATACAGAAGCATGCCAGAGCTCGAGTTGATCGTAGAAAGTACATTGCCATGCGAAGAGCTTGCATTCGTCTACAGTCGTATTGGAGAGGTGTTCTTGCCCGGGAGTCATATGAAATTAGGAGAAGGGAAGCAGCTGCCGTCAAAATTCAAAAGAATATCCGTGCATACCTTGCCAGGAACCTCCATGTTAAAACGAGGATCTCAACAGTTGTTATTCAGGCTGGTATGCGTGCCATGGTTGCTCGGAGTGAATACAGACATACAAGGCAGGTTAAGGCTGTGAAAGTTATTCAATCTTATTGGCGTCAGTATAGAACCTCGCCGAAGTATAATACAGTTAGAAAATCATCAACCAGTTCACAATGTGGATCAAACTCAAAAACTTCTGGTGAAGGTCTTAAGAAGCAAAGGATGACTAACTTGGAAGAAACAGAGGAGGATCTGGTTTTGCCGACATTGCTCGACAACGGTAGAGACACCATTGATGAAACAATTGAAATGATTGCCAAGGAAAGCCGTGTTTCTCCACAGGAAATAGAAGAAGCATACTTTATTATTAAAGAACCCAGTAGTCCGGTTAAAGATGCAGATAAAGTGGCCACTCTCAGAGCAGAAGTGGCTAATCTAAAGGCCATGCTGGTGGCTGAAAGGCAAAGAGCTAATGAGTGTGAAAGGAATTATGTTGTAACGCAGAAAGCAAATGAGGAAGGACGTAAAAAACTAAAAGGAACAGAAAGGAAAGTACGTCAACTTCAGGACTACATTAACAGGATGATACATTGCATGTCAAACCAAATCTCGGAGATGAAAATGATCGTGGGTACTTCTAGTTCAGATGCATCTAATTCTTTTCTGAACGAGGTTTTGACAGATGCCACATCTAGTTGCTCTGATTCATCGTCAGAAGACTTCACCTTTCCTGTTCCAAGTCCATCTGTGCCAACTTTCTCTTCATTCGGTACCAACACTTTTCAGCTGATTGTGCAGGATATTTCAGCAGCAGAAATTCCAGGATCTGAAAGTGACAGGGAAGGGGGATTCTCTGACTACTTCTAA 3279 40.87 MDKPVNIVVGSQIWVGDIDSVWIDGLVLNINGEDAEIQTSDGRQVVVKMSNLYPRDAEAPATGIDDMTRMSYLNEPGLLHNLAIRYAINEIYTYTGNILIAINPFQSISSLYDAHVMEKYKGAPIGELKPHVFAIADVAYRAMINYGKSNSILVSGESGAGKTETTKMLMCYLAFLGGHAASEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKKGRISGAAIRTYLLERSRVCQISDLERNYHCFYLLCAAPPQERERYKLGNPKSFHYLNQSNCYELAGVNDAHDYLATKRAMDIVGIGEQEQDAIFRVVAAILHLGNIEFAKGEESDSSFVKDEESKFHLHMTAELLMCDPNALEDALCKRMMVTPEEVIKRSLDPHGATVSRDGLAKTIYSRLFDWLVDKINVSIGQDPCSKYLIGVLDIYGFESFQTNSFEQFCINYTNEKLQQHFNQHVFKMEQEEYVKEEIDWSYIEFVDNQDVLDLIEKKPGGIIPLLDEACMFPKSNHETFSQKLYQTFKNHKRFTKPKLARSDFTIVHYAGDVLYQSDQFLDKNKDYVVSEHQDLLSASKCAFVGGLFSPHPEETAKSSKFSSIGSRFKLQLQQLMETLNSTQPHYIRCVKPNTVLQPAIFENATVMQQLRSGGVLEAIRIKCAGYPTHRTFSEFLSRFGILAPEVLEGDYEEKAACEKILEKMGLKGYLIGQSKIFLRGNLMAELDARRTGIHCAAAVVIQKHARARVDRRKYIAMRRACIRLQSYWRGVLARESYEIRRREAAAVKIQKNIRAYLARNLHVKTRISTVVIQAGMRAMVARSEYRHTRQVKAVKVIQSYWRQYRTSPKYNTVRKSSTSSQCGSNSKTSGEGLKKQRMTNLEETEEDLVLPTLLDNGRDTIDETIEMIAKESRVSPQEIEEAYFIIKEPSSPVKDADKVATLRAEVANLKAMLVAERQRANECERNYVVTQKANEEGRKKLKGTERKVRQLQDYINRMIHCMSNQISEMKMIVGTSSSDASNSFLNEVLTDATSSCSDSSSEDFTFPVPSPSVPTFSSFGTNTFQLIVQDISAAEIPGSESDREGGFSDYF* 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16571902 16597261 + CsaV3_7G026980.1 Csa07g01609 537172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01609 1092 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 Gene3D - 439 623 - -
Csa07g01609 1092 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 Gene3D Kinesin motor domain 65 662 IPR036961 -
Csa07g01609 1092 CDD MYSc_Myo11 76 720 IPR036018 -
Csa07g01609 1092 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 Gene3D - 667 733 - -
Csa07g01609 1092 ProSiteProfiles IQ motif profile. 806 834 IPR000048 GO:0005515
Csa07g01609 1092 SMART iq_5 830 852 IPR000048 GO:0005515
Csa07g01609 1092 SMART iq_5 734 756 IPR000048 GO:0005515
Csa07g01609 1092 SMART iq_5 757 779 IPR000048 GO:0005515
Csa07g01609 1092 SMART iq_5 782 804 IPR000048 GO:0005515
Csa07g01609 1092 SMART iq_5 805 827 IPR000048 GO:0005515
Csa07g01609 1092 Pfam Myosin head (motor domain) 65 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 Gene3D - 252 310 - -
Csa07g01609 1092 Coils Coil 940 967 - -
Csa07g01609 1092 Pfam IQ calmodulin-binding motif 785 801 IPR000048 GO:0005515
Csa07g01609 1092 Pfam IQ calmodulin-binding motif 809 827 IPR000048 GO:0005515
Csa07g01609 1092 Pfam IQ calmodulin-binding motif 738 755 IPR000048 GO:0005515
Csa07g01609 1092 Pfam IQ calmodulin-binding motif 759 778 IPR000048 GO:0005515
Csa07g01609 1092 ProSiteProfiles IQ motif profile. 735 761 IPR000048 GO:0005515
Csa07g01609 1092 PANTHER MYOSIN 6 1072 - -
Csa07g01609 1092 Gene3D - 735 784 - -
Csa07g01609 1092 Gene3D - 785 835 - -
Csa07g01609 1092 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 1072 - -
Csa07g01609 1092 MobiDBLite consensus disorder prediction 853 877 - -
Csa07g01609 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Csa07g01609 1092 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Csa07g01609 1092 MobiDBLite consensus disorder prediction 853 876 - -
Csa07g01609 1092 ProSiteProfiles IQ motif profile. 783 810 IPR000048 GO:0005515
Csa07g01609 1092 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 786 855 IPR027417 -
Csa07g01609 1092 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g01609 1092 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01609 Csa-Chr7:16571902 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa07g01609 Csa-Chr7:16571902 Csa06g00724 Csa-Chr6:5908642 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01609 K10357 - csv:101220626 2151.33