Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01611 | ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA | 555 | 46.85 | MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC* | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 16618861 | 16619719 | + | CsaV3_7G027000.1 | Csa07g01611 | 537174 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01611 | 184 | Coils | Coil | 91 | 111 | - | - | |
Csa07g01611 | 184 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 17-RELATED | 7 | 128 | - | - | |
Csa07g01611 | 184 | ProSiteProfiles | LOB domain profile. | 10 | 112 | IPR004883 | - | |
Csa07g01611 | 184 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 108 | IPR004883 | - | |
Csa07g01611 | 184 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 7 | 128 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa03g02257 | Csa-Chr3:19991861 | Csa07g01611 | Csa-Chr7:16618861 | 1.44E-60 | dispersed | |
Csa06g00614 | Csa-Chr6:5189706 | Csa07g01611 | Csa-Chr7:16618861 | 3.57E-45 | dispersed | |
Csa07g01611 | Csa-Chr7:16618861 | Csa05g01896 | Csa-Chr5:22166489 | 1.34E-32 | dispersed | |
Csa07g01611 | Csa-Chr7:16618861 | Csa06g00613 | Csa-Chr6:5177900 | 4.88E-45 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32337 | PF03195 | LOB | 1.80E-34 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01611 | K13945 | - | csv:101220863 | 378.252 |