Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01611 ATGGCAGCCTCTTCTTCTTCTTCTACTCCTCCATGTGGAGCTTGCAAATTTCTTAGAAGAAAGTGTGTCAATGGTTGCATCTTTGCTCCTTATTTCCGCCACGAGCTTGGCGCCTCTCACTTCTCCGCCATCCACAAAGTTTTTGGTGCCAGCAACGCTTCCAAGCTTCTCGCTCACCTCCCTGTCTCCCACCGTTGTGAAGCGGCCGTGACCATCTCATATGAAGCTCAAGCGAGACTTCAAGATCCGATTTATGGTTGCGTTTCTCATATTATCGCTCTCCAACAACAGGTTATGAATCTAAGGGCTCAAGTGGCTTATTTAAGAGAACAAGCAGCACAAATTCTTCTCAACAATTATACCACAAGAAACCCTACTGAATTACTTTATGAAAAATCTCCATTTTGTTATTCCGATGACCCATTCTTAGATCTTCAAAGCTGGCTTCTGGCTGAGAGCTGCAGCGCCACCGCACCGGAGCTTGAACCTGCGGCGGTGCCGTACTTTGAGATGAGTGTCGTCGATTCAAAACTCGCCGGAGATTTCTGTTGCTAA 555 46.85 MAASSSSSTPPCGACKFLRRKCVNGCIFAPYFRHELGASHFSAIHKVFGASNASKLLAHLPVSHRCEAAVTISYEAQARLQDPIYGCVSHIIALQQQVMNLRAQVAYLREQAAQILLNNYTTRNPTELLYEKSPFCYSDDPFLDLQSWLLAESCSATAPELEPAAVPYFEMSVVDSKLAGDFCC* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16618861 16619719 + CsaV3_7G027000.1 Csa07g01611 537174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01611 184 Coils Coil 91 111 - -
Csa07g01611 184 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 7 128 - -
Csa07g01611 184 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Csa07g01611 184 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Csa07g01611 184 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02257 Csa-Chr3:19991861 Csa07g01611 Csa-Chr7:16618861 1.44E-60 dispersed
Csa06g00614 Csa-Chr6:5189706 Csa07g01611 Csa-Chr7:16618861 3.57E-45 dispersed
Csa07g01611 Csa-Chr7:16618861 Csa05g01896 Csa-Chr5:22166489 1.34E-32 dispersed
Csa07g01611 Csa-Chr7:16618861 Csa06g00613 Csa-Chr6:5177900 4.88E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32337 PF03195 LOB 1.80E-34 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01611 K13945 - csv:101220863 378.252