Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01616 ATGGATTCGGCGAGGAGTTGGTTTAATCAGCGTAGAGATAGGTTGAGGGGTTCTACAAAGAAGAAGGATAATAGTATGGGAGAGAATGAGGATTCTACTGCTACTGATCAAATGGATGAGGAAGCGCTTTCTAATATCACTAAGCAGAAGGTTGCTGCGGCAAAGCAGTATATTGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAGAGAAAAGAGAGACGAAATGTATTGGAAAAGAAGTTGGCTGATGCTGATGTATCTGAAGAAGATCAAAATAATCTACTGAAGTTCTTAGAGAAGAAGGAAACTGAATACATGCGCCTCCAAAGGCACAAAATGGGAGTTGATGATTTCGATTTACTAACAATTATTGGCAAAGGTGCTTTTGGGGAGGTTCGTGTTTGTAGAGAGAAGACTACAGGTCAGGTGTATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAACATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATTGTGAAACTCTATTGTTCGTTTCAAGATGATGAGTTTCTTTATCTTATTATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGAAGATGAAGCGAGGTTTTATGTTGGAGAGATAGTTTTGGCCATTGAATCTATTCATAAGCACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCAGACTTCGGATTATGCAAACCATTAGATTGCAGTATACTCCGGGAACAAGATTTTGATATAGGGAGTACCCGTAATGGAGCTGGGCAAAATGATGAACGCAATGCAACTCCTCGTACTCAACAAGAGCAACTACAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACCCCAGATTATATTGCTCCAGAGGTTTTGTTGAAGAAGGGTTATGGCATGGAATGTGACTGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGTTATCCACCTTTTTACTCTGATGATCCAATGTCGACTTGTCGGAAGATAGTGAATTGGAGAACTCATTTGAAGTTCCCTGACGAGGCAAAGCTATCCCTCTTGGCAAAAGATCTCATTAGTAAACTACTATGCAATGTTAACCAGAGGCTCGGTACAAATGGTGCGGATGAAATAAAGGTTCATTCGTGGTTTGAAGGCACTGAATGGGATAGGCTATACCAAATGGAAGCTGCATTTGTTCCTGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTCTGACTCGCAAAGCAGTACTTCATCTAAAACTGGTCCATGGAGAAAGATGCTCTCATCGAAGGACATCAACTTTGTTGGATACACTTATAAAAACTTCGAAATTGTCAACGATTATCAATTGCCTGGGATGGCTGAATTGAAGAAGAAATGCAGCAAACCAAAAAGACCGTCAATAAAATCACTCTTTGATGGCGAGTTGGAGGAAGGTGACGCATCTGATACACCTAGTCATAGTCACCAGCACACTGGAGGAAGCTTTTCGAACTCAATGACATCTCCTAAAATGGATGATGTTGATATCAGAAAAGAGTCGATGTAA 1674 40.14 MDSARSWFNQRRDRLRGSTKKKDNSMGENEDSTATDQMDEEALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRNVLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFDLLTIIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGEIVLAIESIHKHNYIHRDIKPDNLLLDKFGHLRLSDFGLCKPLDCSILREQDFDIGSTRNGAGQNDERNATPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLKFPDEAKLSLLAKDLISKLLCNVNQRLGTNGADEIKVHSWFEGTEWDRLYQMEAAFVPEVKDELDTQNFEKFEESDSQSSTSSKTGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMAELKKKCSKPKRPSIKSLFDGELEEGDASDTPSHSHQHTGGSFSNSMTSPKMDDVDIRKESM* 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16674560 16683914 - CsaV3_7G027050.1 Csa07g01616 537179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01616 557 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Csa07g01616 557 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa07g01616 557 Coils Coil 62 82 - -
Csa07g01616 557 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Csa07g01616 557 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01616 557 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Csa07g01616 557 Pfam Protein kinase domain 122 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01616 557 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Csa07g01616 557 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 522 - -
Csa07g01616 557 MobiDBLite consensus disorder prediction 528 546 - -
Csa07g01616 557 MobiDBLite consensus disorder prediction 1 41 - -
Csa07g01616 557 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Csa07g01616 557 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01616 557 MobiDBLite consensus disorder prediction 506 527 - -
Csa07g01616 557 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Csa07g01616 557 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 522 - -
Csa07g01616 557 MobiDBLite consensus disorder prediction 506 557 - -
Csa07g01616 557 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Csa07g01616 557 CDD STKc_NDR_like 118 482 - -
Csa07g01616 557 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01055 Csa-Chr2:10236107 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa02g01948 Csa-Chr2:18251049 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa04g02559 Csa-Chr4:25208589 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa06g03876 Csa-Chr6:30657025 Csa07g01616 Csa-Chr7:16674560 0 dispersed
Csa07g01616 Csa-Chr7:16674560 Csa01g00192 Csa-Chr1:1256453 3.12E-61 dispersed
Csa07g01616 Csa-Chr7:16674560 Csa01g02951 Csa-Chr1:25888812 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78497 PF00069 Pkinase 1.80E-62 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01616 K08790 - csv:101221720 1125.92