Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01649 ATGTCAATTCTTAGTGATTTCTTTGGTAATTACCAAGAAAATTTCTTGTGGAACAATGATCACAATCAGAGTTTTATTTCCGGGGAAGAGACTTCATTTGACTTCAATTACTTGAACGATATGTTGTTTGATGATATGGTTTTCGCCGAAGAGACGATGTCGTCTTCGGATTCAAGCTCTTGCTCGTCTCCGATTGAGTTGCAAGTTAAGGAGGAGGTGGTGGAGGTGGAGGTGGAGGAAGGGAGTGTTTGTGATGAGGTCGTTGTGGAGGAAGATCAATCACATAAGGAGGAGAGGGTTTACCGAGGGGTACGGAGGCGGCCATGGGGGAAGTATGCAGCCGAGATTAGGGATTCGACACGACAAGGGGTGAGAGTGTGGTTAGGGACGTTTGATAGCGCCGAGGCGGCTGCGTTGGCATATGACCAAGCCGCATTTTGTATGAGAGGAGGGTTAGCCACGCTCAACTTTCCGATCGAGGTTGTTCGAGAGTCGCTTCGGGAAATGAAGTATCGGTGGGAGGTCGGGAGCTCACCGGTCTTGGCGCTTAAGCGGCGCCACTCCATACAGAGGAAGAGGATGGCTGAAGTGGAGAAGATGGAGAAGAAGATGATGAAGAAGAAGAAGAAAAGTGTAGTTGTTTTTGAGGATTTGGGTGTTGAGTACTTGGAAGAACTTTTAAGTTTGACTTCTTAA 696 47.41 MSILSDFFGNYQENFLWNNDHNQSFISGEETSFDFNYLNDMLFDDMVFAEETMSSSDSSSCSSPIELQVKEEVVEVEVEEGSVCDEVVVEEDQSHKEERVYRGVRRRPWGKYAAEIRDSTRQGVRVWLGTFDSAEAAALAYDQAAFCMRGGLATLNFPIEVVRESLREMKYRWEVGSSPVLALKRRHSIQRKRMAEVEKMEKKMMKKKKKSVVVFEDLGVEYLEELLSLTS* 232
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 16919258 16920118 - CsaV3_7G027380.1 Csa07g01649 537212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01649 231 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Csa07g01649 231 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Csa07g01649 231 PANTHER DNA-BINDING DOMAIN 32 229 IPR044808 GO:0003700|GO:0009873
Csa07g01649 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 32 229 - -
Csa07g01649 231 Gene3D AP2/ERF domain 100 161 IPR036955 GO:0003700|GO:0006355
Csa07g01649 231 SUPERFAMILY DNA-binding domain 100 160 IPR016177 GO:0003677
Csa07g01649 231 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Csa07g01649 231 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
Csa07g01649 231 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Csa07g01649 231 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02237 Csa07g01649 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01071 Csa-Chr2:10411032 Csa07g01649 Csa-Chr7:16919258 6.71E-40 dispersed
Csa03g02237 Csa-Chr3:19674392 Csa07g01649 Csa-Chr7:16919258 6.04E-50 dispersed
Csa07g01649 Csa-Chr7:16919258 Csa06g03670 Csa-Chr6:29493518 8.96E-31 dispersed
Csa07g01649 Csa-Chr7:16919258 Csa03g01217 Csa-Chr3:9386136 4.46E-51 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32341 PF00847 AP2 4.60E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01649 K14516 - csv:101205053 384.8