Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01660 ATGCAAGGGTCAGGAAAAAGAAGAAGAATGGACCACCTCCAGGGCAGGAATTTGCAGATGGGTCCTCTTTGTTTGGGGAACCCATCTTTGGAATTGAACACAAATGCCAAAACTTGTTCAATCCAACAAATACAATCTCAATCTGCTGCTCTTTATCATCATCATCATCATCACTTGCTTCAGAACAGGGTGGTCTTGAATAATAATCCTAATCCTCCGCAGCCTGAAGTAGTGTATCTTAGGAGCAGTAATGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCGTTTATTTCTTCATTGAGCATTGATGGGAGTGTGGCTAACTTGGATGGGAGTGCCTTCCATTTGATTGGGGCGCCCCGGTCTTCCGATCAAAATTCGTATCATAAGAGGAAATGCAATGGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAATGGGAGATGTCACTGCTCAAAGAAGAGGAAACATAGAGTGAAACGGTCGATCAAGGTGCCCGCGATTAGTAACAAGCTTGCAGATATCCCTCCCGATGATTATTCCTGGAGGAAATATGGCCAAAAGCCAATCAAGGGTTCTCCACACCCAAGAGGATACTACAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGAAAGCACGTTGAGCGTTGTCTCGAAGAACCTTCAATGCTCATTGTTACATATGAAGGTGAACACAACCATCCTAGAATACCTTCTCAACCTGCAAATACTTGA 768 44.27 MQGSGKRRRMDHLQGRNLQMGPLCLGNPSLELNTNAKTCSIQQIQSQSAALYHHHHHHLLQNRVVLNNNPNPPQPEVVYLRSSNGVNLNFDSSSCTQHTMSSTRSFISSLSIDGSVANLDGSAFHLIGAPRSSDQNSYHKRKCNGRGEDGSVKCGSNGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGEHNHPRIPSQPANT* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17076064 17079015 + CsaV3_7G027490.1 Csa07g01660 537223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01660 255 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 32 255 - -
Csa07g01660 255 Pfam WRKY DNA -binding domain 189 246 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g01660 255 SUPERFAMILY WRKY DNA-binding domain 185 247 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g01660 255 Gene3D WRKY domain 172 249 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa07g01660 255 Pfam Plant zinc cluster domain 140 185 IPR018872 -
Csa07g01660 255 ProSiteProfiles WRKY domain profile. 182 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g01660 255 SMART WRKY_cls 187 247 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa07g01660 255 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 32 255 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01149 Csa-Chr2:11212968 Csa07g01660 Csa-Chr7:17076064 8.09E-97 dispersed
Csa06g02959 Csa-Chr6:25618485 Csa07g01660 Csa-Chr7:17076064 6.69E-56 dispersed
Csa07g01660 Csa-Chr7:17076064 Csa01g02661 Csa-Chr1:23633542 1.16E-27 dispersed
Csa07g01660 Csa-Chr7:17076064 Csa04g02431 Csa-Chr4:24478962 3.24E-59 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32342 PF03106 WRKY 2.10E-26 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01660 - - csv:101216822 465.692