Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01674 ATGGCTAACAACCATTCCGATACTCAAGCCGATGATTTCCTCGAACAGATTCTTGGGATCCCTTTTGGTTCCTCCGACCAAGGATTAGCTGGAACTGACGGCGGATTGGCCGGAGCAGCAGCAGCAGCTGCTGCTGCGGCGGCGGCGGTGGCGGCTCAGGGTCAGGCTCCGATGATGCTTCAGCTTAGCTCCGGGGATGGCGGTGGTCATATCACTACGATTGGGAGTGGAAGTGTCGGTGGAACTGGGTTTCATGGCGGACCCCCTTTTCCTCTGGGGTTGAGTTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGAAAACGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCGTCTGTTAAAAATGTTTTTCAAGGCCAACAAATGCATGCTGCTATGGGTGCAGCCCCGCATCCACCAGCAATGCGCCCTAGGGTACGGGCAAGACGAGGACAGGCCACTGACCCACATAGTATTGCAGAGCGGTTACGAAGAGAAAGGATTGCAGAGAGAATTAGGGCCTTGCAGGAACTTGTACCGAGTGTTAATAAGACGGATAGAGCTGCAATGCTTGATGAAATAGTAGACTACGTAAAGTTCCTTCGCCTTCAAGTAAAGGTTCTGAGCATGAGTAGATTGGGTGGAGCTGGTGCTGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAAGGTGGTAGGAACCAACCGGCATGGGACAAGTGGTCGAACGATGGTACAGAGAGACAAGTTGCTAAACTTATGGAAGAAAACGTGGGAGCCGCTATGCAATTCCTACAATCAAAGGCACTCTGCATAATGCCGATCTCATTGGCTTCAGCGATTTATCACACACAACCTCCTGATAGCTCGAGTGTTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 951 50.89 MANNHSDTQADDFLEQILGIPFGSSDQGLAGTDGGLAGAAAAAAAAAAAVAAQGQAPMMLQLSSGDGGGHITTIGSGSVGGTGFHGGPPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVFQGQQMHAAMGAAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYHTQPPDSSSVVKPESNPPP* 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17195587 17199883 - CsaV3_7G027630.1 Csa07g01674 537237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01674 316 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 219 IPR036638 GO:0046983
Csa07g01674 316 Pfam Helix-loop-helix DNA-binding domain 165 209 IPR011598 GO:0046983
Csa07g01674 316 Gene3D - 155 217 IPR036638 GO:0046983
Csa07g01674 316 SMART finulus 166 215 IPR011598 GO:0046983
Csa07g01674 316 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 304 - -
Csa07g01674 316 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 304 - -
Csa07g01674 316 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02842 Csa-Chr1:24945063 Csa07g01674 Csa-Chr7:17195587 1.00E-93 dispersed
Csa02g00267 Csa-Chr2:1833037 Csa07g01674 Csa-Chr7:17195587 1.12E-48 dispersed
Csa07g01674 Csa-Chr7:17195587 Csa03g01590 Csa-Chr3:11810548 4.16E-22 dispersed
Csa07g01674 Csa-Chr7:17195587 Csa01g01870 Csa-Chr1:15708212 2.80E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32345 PF00010 HLH 1.20E-07 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01674 - - csv:101218718 466.077