Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01678 ATGGGGAAATACGAATCTACTTATCATGAGAGTTTGCTTCTCAACATCAGCATAGCTCGAAGGAGATGGAGATTTGCCTTTGCAGCAATATATTCAATCCGGGCCATGCTTTCTCTTGCAGTGACCAAAGGAAATGTCCATTACAATTTAATTAACTTTGAGAATGTGGAGGAAGATGATTCATCTGTTGAACAAATAATCTGCACCAAAGATGATCAGAAGAAGCTGATTGAAATGGTGAAGAACAAAAATAAAGAAGTTTATCATGAGCTTGGTGATGTTGCAACAATTGCAGCTTCTCTCGGAACAAATCCGGAGAATGGAATCAAGGACAATAGTGATGTCGTGAATGAACGGCGCCGAGTATTTGGTTCTAACACTTACCACAAGCGGCCACCGAAGAGTTTCTTTTACTTTGTTGTGGAAGCTTTCAAGGACACCACCATCCTCATTTTACTTGTATGTGCGGCTCTGGCGCTCGGGTTTGGAATAAAAGAACATGGACTACAAGAAGGATGGTATGAAGGAGGGAGCATATATGTAGCTGTTGCGTTGGTAGTTATTGTGTCAGCGATTAGTAACTTCAGACAGGAGGTTCAATTCGAGAAGTTGTCGAAAATAGGTAACAACATCAAAGTGGAGGTACTAAGAGATGGAAGGCGAATACAAGTTTCCATATTCGATATTGTAGTTGGAGATGTGGTGGTTCTAAAGCTCGGTGACCAAATTCCAGCTGATGGATTGTTTTTGAGTGGCCATTCTTTGCAAGTGGATGAGTCAAGCATGACAGGAGAGAGTGATCACGTCGAACTCAATATAACAGAGAACCCCTTCTTGTTGTCTGGAACAAAAGTAGTAGATGGCTATGGTCAAATGCTGGTGACATCAGTGGGAATGGACACAGCATGGGGTGAGATGATGAGCTCCATATCTCGGGATTCCGAGGAGCAAACACCATTGCAAGTTCGTCTTAACAAATTAACCACTTCTATAGGAAAGGTAGGACTCTCAGTTGCTTTGCTGGTCCTTGTTGTCATGTTAGCACGCTATTTCACTGGAAACACAGAAGATGATTTTGGAAACAGGGAGTACAATGGTCGAAAAACAGATATAGATGATGTGCTCAATGCAGTTATCCGTATAGTTGCTGCTGCAGTTACCATTGTAGTGGTTGCAATCCCTGAAGGTTTGCCATTGGCTGTGACACTAACACTTGCTTACTCTATGAAGAGAATGATGGCAGATCAGGCAATGGTGAGGAAACTGTCAGCTTGCGAAACAATGGGATCAGCAACCGTAATTTGCACTGACAAAACAGGTACTTTGACACTAAACCAAATGAAAGTAACCAAATTTTGGATTGGCCAAGAATTCATTGAGGAAGAAAACTCTTCCAATACCATAGCAGAGGCTGTTCATGAGTTGATAAATCAAGGAGTAGGCTTGAATACAACTGGTAGTGTCTATCGACCTTCACCAGAATCCAAAACTGAAATCTCCGGCAGTCCAACTGAGAAAGCGATTCTATCTTGGGCGGTCACAGAATTCGGTATGGACATGGAGAAGTTGAAGAAATCATATGCCATTCTTCATGTGGAAACCTTCAACTCAGAGAAAAAAAGAAGTGGGGTTTTGGTGAGAAAATTGACTGATAACACAATCCATCAGCACTGGAAAGGAGCTGCTGAGATGATACTCTCAATGTGTTCAAGTTACTTTGAAAGAAATGGGACAACATATCCCTTGGATATTGAGACCCGAAGAAAACTTGAGAACATAATCCAAGGAATGGCAGCAAGTAGCCTAAGATGCATTGCCTTTGCTTATAGACAAATCTCAAAAGACGAGGAAAAAAATGGCATACCAAATGCCTCAAACACGAAAGAAGATGACTATACATTAATGGGAATCGTTGGCATTAAAGATCCATGTAGGCCAGAGGCGAAGAACGCCGTGGACACATGTAAATCAGCTGGAGTTTCTATTAAGATGATCACAGGAGACAACATTTTCACAGCAAAAGCTATAGCCACAGAATGTGGAATACTAGATTTTGATCACAACACTGCAAGCAAAGGAGAAGTAATAGAAGGTTCCGAATTCCGAAACTACTCGAATGAAGAGAGACTACGACGAGTTGATCAAATCAAGGTAATGGCAAGATCCACTCCGTTTGACAAGCTTTTGATGGTTCAATGCTTGAAACAGAAAGGCCATGTCGTAGCAGTAACTGGAGACGGTACAAATGATGCACCGGCTCTAAAAGAAGCTGACATAGGACTTTCCATGGGAATTGAAGGCACAGAGGTTGCAAAAGAGAGTTCAGACATTGTTATCTTGGATGATAACTTTAACACAGTAGCCACAGTCTTGAGGTGGGGAAGATGTGTATATAACAACATCCAAAAATTTATCCAATTTCAATTGACGGTCAATGTTGCAGCTCTCACAATTAATTTTATAGCAGCAGTATCAGCTGGAGAAGTTCCCTTAACAGCAGTCCAATTATTGTGGGTAAATCTCATAATGGATACATTGGGTGCTCTTGCACTTGCTACTGAGAGACCCAATGACGAATTAATGCAAAAGCCTCCCGTTGGAAGAACTGAACCCCTAATAACAAATATCATGTGGAGAAACCTATTAGCTCAAGCTTTATACCAAATAGCAATACTCTTAATTTTCCAGTTCCAAGGAAGCAACATCTTCGACATAAGTGAAGCAGTAAACGATACACTAATCTTCAACACTTTTGTCCTCTGCCAAATCTTTAATGAGTTCAACTCAAGAAAACTAGAGAAACAAAACGTTTTCGAAGGCATCCTAAAGAATCATTTATTCTTAGGGATCGTGGGAGTAACGGTTGTCCTACAAGTTGTTATGGTAGAATTCCTTAAGAAATTTGCAAATACTGTGAATCTAAATGGTTGGCAGTGGGGACTTTGCATTGCCATTGCAGCATTTTCTTGGCCCATTGGTTGGATTGTCAAATTTTTGCCCGTTTCTGATAAGCCTTTCCTCAGCTACTTCAAATGGTTCTAA 3042 40.96 MGKYESTYHESLLLNISIARRRWRFAFAAIYSIRAMLSLAVTKGNVHYNLINFENVEEDDSSVEQIICTKDDQKKLIEMVKNKNKEVYHELGDVATIAASLGTNPENGIKDNSDVVNERRRVFGSNTYHKRPPKSFFYFVVEAFKDTTILILLVCAALALGFGIKEHGLQEGWYEGGSIYVAVALVVIVSAISNFRQEVQFEKLSKIGNNIKVEVLRDGRRIQVSIFDIVVGDVVVLKLGDQIPADGLFLSGHSLQVDESSMTGESDHVELNITENPFLLSGTKVVDGYGQMLVTSVGMDTAWGEMMSSISRDSEEQTPLQVRLNKLTTSIGKVGLSVALLVLVVMLARYFTGNTEDDFGNREYNGRKTDIDDVLNAVIRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMKVTKFWIGQEFIEEENSSNTIAEAVHELINQGVGLNTTGSVYRPSPESKTEISGSPTEKAILSWAVTEFGMDMEKLKKSYAILHVETFNSEKKRSGVLVRKLTDNTIHQHWKGAAEMILSMCSSYFERNGTTYPLDIETRRKLENIIQGMAASSLRCIAFAYRQISKDEEKNGIPNASNTKEDDYTLMGIVGIKDPCRPEAKNAVDTCKSAGVSIKMITGDNIFTAKAIATECGILDFDHNTASKGEVIEGSEFRNYSNEERLRRVDQIKVMARSTPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFNTVATVLRWGRCVYNNIQKFIQFQLTVNVAALTINFIAAVSAGEVPLTAVQLLWVNLIMDTLGALALATERPNDELMQKPPVGRTEPLITNIMWRNLLAQALYQIAILLIFQFQGSNIFDISEAVNDTLIFNTFVLCQIFNEFNSRKLEKQNVFEGILKNHLFLGIVGVTVVLQVVMVEFLKKFANTVNLNGWQWGLCIAIAAFSWPIGWIVKFLPVSDKPFLSYFKWF* 1014
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17247587 17253075 + CsaV3_7G027670.1 Csa07g01678 537241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01678 1013 Gene3D - 142 998 - -
Csa07g01678 1013 SMART Cation_ATPase_N_a_2 93 164 IPR004014 -
Csa07g01678 1013 SFLD Haloacid Dehalogenase 417 797 - -
Csa07g01678 1013 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 59 1001 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Csa07g01678 1013 SUPERFAMILY HAD-like 433 849 IPR036412 -
Csa07g01678 1013 Pfam Cation transporter/ATPase, N-terminus 92 158 IPR004014 -
Csa07g01678 1013 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 442 640 IPR023299 GO:0000166
Csa07g01678 1013 Pfam haloacid dehalogenase-like hydrolase 433 758 - -
Csa07g01678 1013 Pfam E1-E2 ATPase 212 413 - -
Csa07g01678 1013 SFLD p-type atpase 417 797 IPR044492 -
Csa07g01678 1013 PRINTS H+-transporting ATPase (proton pump) signature 590 608 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g01678 1013 PRINTS H+-transporting ATPase (proton pump) signature 744 760 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g01678 1013 PRINTS H+-transporting ATPase (proton pump) signature 776 801 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g01678 1013 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 1001 IPR023298 -
Csa07g01678 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 715 824 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g01678 1013 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 378 477 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g01678 1013 Gene3D - 445 643 IPR023299 GO:0000166
Csa07g01678 1013 Gene3D - 432 789 IPR023214 -
Csa07g01678 1013 SUPERFAMILY Calcium ATPase, transduction domain A 210 309 IPR008250 -
Csa07g01678 1013 CDD P-type_ATPase_Ca_PMCA-like 116 877 - -
Csa07g01678 1013 PANTHER CALCIUM-TRANSPORTING ATPASE 17 988 - -
Csa07g01678 1013 ProSitePatterns E1-E2 ATPases phosphorylation site. 437 443 IPR018303 -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 258 272 - -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 435 449 - -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 636 647 - -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 658 668 - -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Csa07g01678 1013 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Csa07g01678 1013 Pfam Cation transporting ATPase, C-terminus 829 999 IPR006068 -
Csa07g01678 1013 PANTHER CATION TRANSPORTING ATPASE 17 988 - -
Csa07g01678 1013 Gene3D - 114 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01881 Csa-Chr2:17868741 Csa07g01678 Csa-Chr7:17247587 6.63E-97 dispersed
Csa07g00261 Csa-Chr7:2035486 Csa07g01678 Csa-Chr7:17247587 9.83E-91 dispersed
Csa07g01678 Csa-Chr7:17247587 Csa07g02289 Csa-Chr7:21300958 0 dispersed
Csa02g00321 Csa-Chr2:2193143 Csa07g01678 Csa-Chr7:17247587 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01678 K01537 - csv:101220140 1891.32