Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01699 | ATGTTTGCTGCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTGCTAGTGTCTCTTCTACCACAAGAATCCACCCTGATTTCACTTCCTTAAACCCTCTCCTCCCATCTTTTTCTGATATTCATCACCCTCCACAAAAACCCAAGAAGAAACGAAGCCTTCCCGGTAACCCAGACCCGGATGCAGATGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACCAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTTCAAAGGGATCAAAATTTACAATTACATAGGAGAGGACACAATTTGCCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAAAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCCTTAGGAGATCTCACAGGAATTAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGTTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCACTGGCGGAAGAAAGTGCAAGGCTTTCAGCTAACCAATTGGCCATGGCGGCTGCCGTGGCAGCTGCCGCCGTCTCGGGTGCCACTGACGTCAACATAAACTCGTCCTCAGCCACTGCCGCGGTGCAATCTCTTTTTCCCTATGGTAATCATCATCATCAATACTCGAGTCCATCATTGTCATCATTGCCAATGGCATCGCAAACCCACGTGTCTTTAAACCCTTGGGAGCATCATCAAAACCCTAATAACCCTAATCACAACCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATCCTCCACATAATTCTCATAATTTTCACCAAATTCCAAATTTTGCCCTCTCCAATTCCGCCTCATCCAACAACAACAACAACAACCCTTTTGGTCTAATTCAAGAGCATCAACACCACCATCAACAACAACAAAAGGTACCCTCATCCTCCACCTCTTCCATGATAACTTCGCCATTTAGAAACCTCCACGTGTCAGTTCACCAAGGATCAAATGCTGCCACGTCAGCACACCTATCAGCCACTGCCCTACTCCAAAAGGCAGCAACAGTTGGCGTTAGCGCTTCAAAATCCGGTCACCATCAGGCCGAGTCAGCGGGCCATATAACTCACTTCAACATGCCCAACATACCCGAGTTCGGCCCTCCCAATCACATCGACTCACTGAGTCAACTTGGTCCCGACTACGCAACCTGGCAGAAGACTGACCGGCTGACCAGAGACTTTCTGGGTCTGACCGGTGATGGGAACGGCGGTGCTGGTGGTGGATCCGCGGGTGATGGAGTGGTGCAGGTTAGCATGAGCGTGAAGGATATGTTAAGTTACGCAGGTGGATTGGAGATGTTTAAGCGTCACAACAACAACAACAATAACACTAATAACAATAATAATAGCAATAATTTTGGATATGGTGAGCCACCTGCCAATGAAGCTTGGGGAGACTGTTGA | 1578 | 45.25 | MFAATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPDADVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAVAAAAVSGATDVNINSSSATAAVQSLFPYGNHHHQYSSPSLSSLPMASQTHVSLNPWEHHQNPNNPNHNLQIIKPEDSNSHPPHNSHNFHQIPNFALSNSASSNNNNNNPFGLIQEHQHHHQQQQKVPSSSTSSMITSPFRNLHVSVHQGSNAATSAHLSATALLQKAATVGVSASKSGHHQAESAGHITHFNMPNIPEFGPPNHIDSLSQLGPDYATWQKTDRLTRDFLGLTGDGNGGAGGGSAGDGVVQVSMSVKDMLSYAGGLEMFKRHNNNNNNTNNNNNSNNFGYGEPPANEAWGDC* | 526 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 17501882 | 17506024 | + | CsaV3_7G027880.1 | Csa07g01699 | 537262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01699 | 525 | MobiDBLite | consensus disorder prediction | 494 | 525 | - | - | |
Csa07g01699 | 525 | MobiDBLite | consensus disorder prediction | 36 | 64 | - | - | |
Csa07g01699 | 525 | Pfam | Zinc finger, C2H2 type | 79 | 101 | IPR013087 | - | |
Csa07g01699 | 525 | SMART | c2h2final6 | 120 | 150 | IPR013087 | - | |
Csa07g01699 | 525 | SMART | c2h2final6 | 155 | 175 | IPR013087 | - | |
Csa07g01699 | 525 | SMART | c2h2final6 | 79 | 101 | IPR013087 | - | |
Csa07g01699 | 525 | SUPERFAMILY | beta-beta-alpha zinc fingers | 78 | 175 | IPR036236 | - | |
Csa07g01699 | 525 | MobiDBLite | consensus disorder prediction | 278 | 358 | - | - | |
Csa07g01699 | 525 | Gene3D | Classic Zinc Finger | 58 | 127 | - | - | |
Csa07g01699 | 525 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 8 | 505 | - | - | |
Csa07g01699 | 525 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 101 | IPR013087 | - | |
Csa07g01699 | 525 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 12 | 8 | 505 | - | - | |
Csa07g01699 | 525 | MobiDBLite | consensus disorder prediction | 494 | 514 | - | - | |
Csa07g01699 | 525 | Gene3D | Classic Zinc Finger | 148 | 213 | - | - | |
Csa07g01699 | 525 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa04g00519 | Csa-Chr4:3406522 | Csa07g01699 | Csa-Chr7:17501882 | 6.96E-108 | dispersed | |
Csa07g01699 | Csa-Chr7:17501882 | Csa04g02543 | Csa-Chr4:25110072 | 6.77E-107 | dispersed | |
Csa07g01699 | Csa-Chr7:17501882 | Csa03g04077 | Csa-Chr3:35706524 | 9.09E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32348 | PF00096 | zf-C2H2 | 0.0053 | CL0361 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01699 | K25870 | - | csv:101208253 | 950.273 |