Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01699 ATGTTTGCTGCAACAATGTCCAATTCAACTTCTTTGTCTGAAGAAGCTGCTAGTGTCTCTTCTACCACAAGAATCCACCCTGATTTCACTTCCTTAAACCCTCTCCTCCCATCTTTTTCTGATATTCATCACCCTCCACAAAAACCCAAGAAGAAACGAAGCCTTCCCGGTAACCCAGACCCGGATGCAGATGTGATAGCGCTTTCGCCGAAAACACTACTAGCAACCAATAGGTTTGTGTGTGAGATTTGCAACAAGGGTTTTCAAAGGGATCAAAATTTACAATTACATAGGAGAGGACACAATTTGCCATGGAAATTGAAGCAAAGAAACAACAAAGAAGTGAAGAAAAAAGCCTATGTTTGTCCAGAACCAAGTTGTGTTCATCATCATCCTTCAAGAGCCTTAGGAGATCTCACAGGAATTAAAAAACATTACTGCAGAAAACATGGTGAAAAGAAATGGAAATGTGATAAATGTTCCAAAGTTTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGCACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGATAGCTTCATAACCCATAGAGCTTTTTGTGATGCACTGGCGGAAGAAAGTGCAAGGCTTTCAGCTAACCAATTGGCCATGGCGGCTGCCGTGGCAGCTGCCGCCGTCTCGGGTGCCACTGACGTCAACATAAACTCGTCCTCAGCCACTGCCGCGGTGCAATCTCTTTTTCCCTATGGTAATCATCATCATCAATACTCGAGTCCATCATTGTCATCATTGCCAATGGCATCGCAAACCCACGTGTCTTTAAACCCTTGGGAGCATCATCAAAACCCTAATAACCCTAATCACAACCTCCAAATCATTAAGCCAGAGGATTCAAATTCTCATCCTCCACATAATTCTCATAATTTTCACCAAATTCCAAATTTTGCCCTCTCCAATTCCGCCTCATCCAACAACAACAACAACAACCCTTTTGGTCTAATTCAAGAGCATCAACACCACCATCAACAACAACAAAAGGTACCCTCATCCTCCACCTCTTCCATGATAACTTCGCCATTTAGAAACCTCCACGTGTCAGTTCACCAAGGATCAAATGCTGCCACGTCAGCACACCTATCAGCCACTGCCCTACTCCAAAAGGCAGCAACAGTTGGCGTTAGCGCTTCAAAATCCGGTCACCATCAGGCCGAGTCAGCGGGCCATATAACTCACTTCAACATGCCCAACATACCCGAGTTCGGCCCTCCCAATCACATCGACTCACTGAGTCAACTTGGTCCCGACTACGCAACCTGGCAGAAGACTGACCGGCTGACCAGAGACTTTCTGGGTCTGACCGGTGATGGGAACGGCGGTGCTGGTGGTGGATCCGCGGGTGATGGAGTGGTGCAGGTTAGCATGAGCGTGAAGGATATGTTAAGTTACGCAGGTGGATTGGAGATGTTTAAGCGTCACAACAACAACAACAATAACACTAATAACAATAATAATAGCAATAATTTTGGATATGGTGAGCCACCTGCCAATGAAGCTTGGGGAGACTGTTGA 1578 45.25 MFAATMSNSTSLSEEAASVSSTTRIHPDFTSLNPLLPSFSDIHHPPQKPKKKRSLPGNPDPDADVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHHPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKVYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAMAAAVAAAAVSGATDVNINSSSATAAVQSLFPYGNHHHQYSSPSLSSLPMASQTHVSLNPWEHHQNPNNPNHNLQIIKPEDSNSHPPHNSHNFHQIPNFALSNSASSNNNNNNPFGLIQEHQHHHQQQQKVPSSSTSSMITSPFRNLHVSVHQGSNAATSAHLSATALLQKAATVGVSASKSGHHQAESAGHITHFNMPNIPEFGPPNHIDSLSQLGPDYATWQKTDRLTRDFLGLTGDGNGGAGGGSAGDGVVQVSMSVKDMLSYAGGLEMFKRHNNNNNNTNNNNNSNNFGYGEPPANEAWGDC* 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 17501882 17506024 + CsaV3_7G027880.1 Csa07g01699 537262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01699 525 MobiDBLite consensus disorder prediction 494 525 - -
Csa07g01699 525 MobiDBLite consensus disorder prediction 36 64 - -
Csa07g01699 525 Pfam Zinc finger, C2H2 type 79 101 IPR013087 -
Csa07g01699 525 SMART c2h2final6 120 150 IPR013087 -
Csa07g01699 525 SMART c2h2final6 155 175 IPR013087 -
Csa07g01699 525 SMART c2h2final6 79 101 IPR013087 -
Csa07g01699 525 SUPERFAMILY beta-beta-alpha zinc fingers 78 175 IPR036236 -
Csa07g01699 525 MobiDBLite consensus disorder prediction 278 358 - -
Csa07g01699 525 Gene3D Classic Zinc Finger 58 127 - -
Csa07g01699 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 505 - -
Csa07g01699 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 101 IPR013087 -
Csa07g01699 525 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 505 - -
Csa07g01699 525 MobiDBLite consensus disorder prediction 494 514 - -
Csa07g01699 525 Gene3D Classic Zinc Finger 148 213 - -
Csa07g01699 525 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00519 Csa-Chr4:3406522 Csa07g01699 Csa-Chr7:17501882 6.96E-108 dispersed
Csa07g01699 Csa-Chr7:17501882 Csa04g02543 Csa-Chr4:25110072 6.77E-107 dispersed
Csa07g01699 Csa-Chr7:17501882 Csa03g04077 Csa-Chr3:35706524 9.09E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32348 PF00096 zf-C2H2 0.0053 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01699 K25870 - csv:101208253 950.273