Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01765 ATGCTTCCGTGGGGAGGTATTAGCTGCTGTTTGAGTGCAGCTGCTCTTTATCTTCTTGGAAGGAGTAGTGGCCGGGATGCGGAGTTACTGAAATCTGTCACGCGGGTCAATCAGTTGAAGGAATTGGCTCAATTGCTTGAGGCAGAACATTTGTTACCTTTGGTCGTTGCAATTTCTGGAAGAGTTAGCTCTGATACACCAATAAATTGTGAATTTAGTGGTTTAAGGGGTGTAATTGTGGAGGAAACGGCAGAACAACATTTTCTAAAGCACAACGATGCAGGATCATGGATTCAGGATTCTGCACTGATGCTCTCCATGAGCAAAGAAGTTCCTTGGTATCTGGATGATGGGACTGGTCGTGCGTTTGTGCTGGGAGCTCGAAATGCCACAAATTTTATATTACCAGTAGTGAGTGAGGTATTTGAAGAATCTGGCAGATCCCTTATGCGTGGCACTTTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGCGAATTGAGCGTGTTCTACCTACCGGTACTTCCTTGACTGTTGTTGGTGAGGCAGCCAAAGATGACATTGGTACAATCAGAATTCAACGTCCACACAAGGGACCATTTTATGTCTCCCCAAAAACCATTGATCAACTCATAAGCAATCTTGGGAAGTGGGCCAGGTGGTACAAGTATGCTTCCATGGGCTTGAGTATATTTGGTTTGTATCTGGTTACAAAGCATGTCATTCTTTATCTCATGGAGAGAAGGCGTCGCTGGGAATTGCAGAAAAGGGTCCTCGCTGCAGCTGCCAAAAGATCAAGCCAAGAAAATGAAGGGGAAATTGAAAAGGCCAGCAATGGAACAGATGGTACAAAGAGAGACCGGTCAATGCCAGATCTTTGTGTAATATGTCTCGAGAGAGACTACAATGCTGTTTTTGTCCCGTGCGGCCATATGTGCTGTTGTGTAGCATGTTGTTCACATTTAACAAACTGTCCACTCTGTCGTCGACGAATTGAGCTGGTAGTTAAGACCTTCCGCCATTGA 1029 44.8 MLPWGGISCCLSAAALYLLGRSSGRDAELLKSVTRVNQLKELAQLLEAEHLLPLVVAISGRVSSDTPINCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTGRAFVLGARNATNFILPVVSEVFEESGRSLMRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDIGTIRIQRPHKGPFYVSPKTIDQLISNLGKWARWYKYASMGLSIFGLYLVTKHVILYLMERRRRWELQKRVLAAAAKRSSQENEGEIEKASNGTDGTKRDRSMPDLCVICLERDYNAVFVPCGHMCCCVACCSHLTNCPLCRRRIELVVKTFRH* 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18042167 18052754 - CsaV3_7G028540.1 Csa07g01765 537328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01765 342 CDD RING-HC_LRSAM1 294 333 - -
Csa07g01765 342 SUPERFAMILY RING/U-box 294 336 - -
Csa07g01765 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Csa07g01765 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 335 - -
Csa07g01765 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 262 341 IPR013083 -
Csa07g01765 342 PANTHER - 1 309 IPR044231 GO:0004842|GO:0016567
Csa07g01765 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SP1-RELATED 1 309 - -
Csa07g01765 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03928 Csa-Chr6:31013453 Csa07g01765 Csa-Chr7:18042167 2.46E-06 dispersed
Csa07g01765 Csa-Chr7:18042167 Csa02g01301 Csa-Chr2:12650213 2.97E-06 dispersed
Csa07g01765 Csa-Chr7:18042167 Csa02g01059 Csa-Chr2:10277417 4.79E-07 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01765 K15688 - csv:101218196 667.151