Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01780 | ATGGATTCGTATTTCGGAAACACCGTGATGAAGTTGGCTTTGAAGGAAGACCCTGAAGAGCATCGTATTGCATTGTTTATATTGCTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAAAAAAGTCGTTGGATAAATGAATCAGTCACTGCCATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTAGTAACCACCAAAGGCAGAAACTCACATATACTAGTGTTTAGTGAAGAACTTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTCGAAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGTGATCTCATTTTTCATCATTTCACTTGGTTCGCTCCATTTATTCAAGAAGTTTGATATTGGCTTCCTAGACGTGGGTGATTATTTTGCCCTTGGAGCAATCTTATCAGCCACAGATAGTGTTTGTACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTCGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTACTTTTCAAAGCATTCCAGAGATTCAACCTCTCTGACGTCACCTCTTCCAACGCCATCCAGCTTCTTGGAAACTTTTTCTATCTATTTTTTACAAGCACCTTGCTGGGAGTGATTGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTGATGCCTTACCTTTCGTATATGATTGCTGAATTGTGCTATCTAAGTGGTATTCTTACTATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTTACAACCAAGCATACTTTTGCAACATTGTCATTTGTTTCCGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACATCGGCTGGAGTGAGTCTAATACTGCTTGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTATTTCCACTCTCTTTTATATCGAACTTGACTAGAAAGTCTCAAACTGACAAAGTTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGCACACACAACTGCAAGGGAATGCGATCATGATTACTAGCACAATCACAATTGTTCTCATCACTAATGTGGTGTTTGGACTATTAACACAACCTATTGTGAGGCACATGCTTTCACTGCATGATAAACAAATAGATGGCATAATGCTGGCAGATTCTCCACTTAAGTCCCTGAATGATCCTCTTATGCCTAGTGTTTATGATTCCGAATCCGATATTGGAGGGACAAACATTCCCCGACCTACCAGCTTGCGGATGCTGTTGACAACTCCAACTCATTCTGTCCATTACTATTGGCGGATGTTCGATGATCGGTATATGCGACCTGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGTTCACCAACTGAACGGTATATCCATTGA | 1608 | 40.98 | MDSYFGNTVMKLALKEDPEEHRIALFILLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILVTTKGRNSHILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTVISFFIISLGSLHLFKKFDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAFQRFNLSDVTSSNAIQLLGNFFYLFFTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMIAELCYLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVFPLSFISNLTRKSQTDKVGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTQPIVRHMLSLHDKQIDGIMLADSPLKSLNDPLMPSVYDSESDIGGTNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTERYIH* | 536 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 18158703 | 18166931 | - | CsaV3_7G028690.1 | Csa07g01780 | 537343 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01780 | 535 | Gene3D | - | 143 | 194 | - | - | |
Csa07g01780 | 535 | Pfam | Sodium/hydrogen exchanger family | 26 | 440 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Csa07g01780 | 535 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 10 | 534 | - | - | |
Csa07g01780 | 535 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 10 | 534 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 | |
Csa07g01780 | 535 | TIGRFAM | b_cpa1: sodium/hydrogen exchanger 3 | 22 | 450 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa07g01780 | 535 | PRINTS | Na+/H+ exchanger signature | 81 | 92 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa07g01780 | 535 | PRINTS | Na+/H+ exchanger signature | 95 | 109 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa07g01780 | 535 | PRINTS | Na+/H+ exchanger signature | 110 | 118 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa07g01780 | 535 | PRINTS | Na+/H+ exchanger signature | 150 | 160 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g01553 | Csa-Chr1:11136105 | Csa07g01780 | Csa-Chr7:18158703 | 1.04E-55 | dispersed | |
Csa06g00570 | Csa-Chr6:4886077 | Csa07g01780 | Csa-Chr7:18158703 | 0 | dispersed | |
Csa07g00987 | Csa-Chr7:8761829 | Csa07g01780 | Csa-Chr7:18158703 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01780 | - | K14724 | csv:101206431 | 1030.78 |