Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01780 ATGGATTCGTATTTCGGAAACACCGTGATGAAGTTGGCTTTGAAGGAAGACCCTGAAGAGCATCGTATTGCATTGTTTATATTGCTTCTCTGTGCTTGTATTGTAATTGGGCATCTTCTTGAAAAAAGTCGTTGGATAAATGAATCAGTCACTGCCATTTTCATTGGTCTTTTCACTGGAACTCTCATCTTAGTAACCACCAAAGGCAGAAACTCACATATACTAGTGTTTAGTGAAGAACTTTTCTTCATTTATGTTCTTCCACCTATAATTTTTAATGCCGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTCGAAACTTTCTAATGATCATGTTGTTTGGGGCTGTTGGTACTGTGATCTCATTTTTCATCATTTCACTTGGTTCGCTCCATTTATTCAAGAAGTTTGATATTGGCTTCCTAGACGTGGGTGATTATTTTGCCCTTGGAGCAATCTTATCAGCCACAGATAGTGTTTGTACCTTGCAGGTGCTTAATCAGGATGAGACTCCTTTACTGTATAGTCTAGTCTTCGGTGAAGGTGTGGTTAATGATGCTACTTCTGTCGTACTTTTCAAAGCATTCCAGAGATTCAACCTCTCTGACGTCACCTCTTCCAACGCCATCCAGCTTCTTGGAAACTTTTTCTATCTATTTTTTACAAGCACCTTGCTGGGAGTGATTGTTGGGCTGTCCAGTGCATACATCATAAAGAAACTGTACTTTGGCAGGCACTCAACTGATCGGGAGGTTGCTTTGATGATTTTGATGCCTTACCTTTCGTATATGATTGCTGAATTGTGCTATCTAAGTGGTATTCTTACTATGTTCTTTTGTGGGATTGTCATGTCTCATTACACTTGGCATAATGTGACTGAAAGTTCACGAGTTACAACCAAGCATACTTTTGCAACATTGTCATTTGTTTCCGAGATTTTCATCTTCTTATATGTTGGTATGGATGCCTTGGATATTGAGAAGTGGAAAGTTGTTGGCCAAAGGCCTTGGACATCGGCTGGAGTGAGTCTAATACTGCTTGGTTTAGTCCTTGTTGCGAGAGCAGCTTTTGTATTTCCACTCTCTTTTATATCGAACTTGACTAGAAAGTCTCAAACTGACAAAGTTGGGTTTAAGCAGCAGGTTACAATTTGGTGGGCTGGGCTCATGAGAGGTGCTGTATCTGTGGCCCTTGCTTATAATCAGTTTACAAGGTCAGGGCACACACAACTGCAAGGGAATGCGATCATGATTACTAGCACAATCACAATTGTTCTCATCACTAATGTGGTGTTTGGACTATTAACACAACCTATTGTGAGGCACATGCTTTCACTGCATGATAAACAAATAGATGGCATAATGCTGGCAGATTCTCCACTTAAGTCCCTGAATGATCCTCTTATGCCTAGTGTTTATGATTCCGAATCCGATATTGGAGGGACAAACATTCCCCGACCTACCAGCTTGCGGATGCTGTTGACAACTCCAACTCATTCTGTCCATTACTATTGGCGGATGTTCGATGATCGGTATATGCGACCTGTTTTTGGTGGAAGAGGTTTTGTACCTTTCATCCCTGGTTCACCAACTGAACGGTATATCCATTGA 1608 40.98 MDSYFGNTVMKLALKEDPEEHRIALFILLLCACIVIGHLLEKSRWINESVTAIFIGLFTGTLILVTTKGRNSHILVFSEELFFIYVLPPIIFNAGFQVKKKQFFRNFLMIMLFGAVGTVISFFIISLGSLHLFKKFDIGFLDVGDYFALGAILSATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFKAFQRFNLSDVTSSNAIQLLGNFFYLFFTSTLLGVIVGLSSAYIIKKLYFGRHSTDREVALMILMPYLSYMIAELCYLSGILTMFFCGIVMSHYTWHNVTESSRVTTKHTFATLSFVSEIFIFLYVGMDALDIEKWKVVGQRPWTSAGVSLILLGLVLVARAAFVFPLSFISNLTRKSQTDKVGFKQQVTIWWAGLMRGAVSVALAYNQFTRSGHTQLQGNAIMITSTITIVLITNVVFGLLTQPIVRHMLSLHDKQIDGIMLADSPLKSLNDPLMPSVYDSESDIGGTNIPRPTSLRMLLTTPTHSVHYYWRMFDDRYMRPVFGGRGFVPFIPGSPTERYIH* 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18158703 18166931 - CsaV3_7G028690.1 Csa07g01780 537343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01780 535 Gene3D - 143 194 - -
Csa07g01780 535 Pfam Sodium/hydrogen exchanger family 26 440 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa07g01780 535 PANTHER SODIUM/HYDROGEN EXCHANGER 10 534 - -
Csa07g01780 535 PANTHER SODIUM/HYDROGEN EXCHANGER 10 534 IPR018422 GO:0006812|GO:0015299|GO:0016021
Csa07g01780 535 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 22 450 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g01780 535 PRINTS Na+/H+ exchanger signature 81 92 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g01780 535 PRINTS Na+/H+ exchanger signature 95 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g01780 535 PRINTS Na+/H+ exchanger signature 110 118 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa07g01780 535 PRINTS Na+/H+ exchanger signature 150 160 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01553 Csa-Chr1:11136105 Csa07g01780 Csa-Chr7:18158703 1.04E-55 dispersed
Csa06g00570 Csa-Chr6:4886077 Csa07g01780 Csa-Chr7:18158703 0 dispersed
Csa07g00987 Csa-Chr7:8761829 Csa07g01780 Csa-Chr7:18158703 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01780 - K14724 csv:101206431 1030.78