Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01808 CCAAATGCTGAAGTTATTGCTTTATCACCAACCACCCTAATGGCTAGAAATAGGTTTGTGTGTGAGATTTGCAACAAGGGGTTTCAAAGAGATCAAAACCTGCAATTGCATAGGAGAGGCCACAACCTTCCATGGAAACTCCGGCAAAGAACCGGTGCCGAAGTGAAGAAAAGGGTTTACGTATGCCCTGAACCAACATGTGTTCATCACAACCCGGCTCGAGCTCTGGGAGATCTTACTGGAATTAAGAAGCATTTTAGTAGAAAGCATGGGGAAAAGAAATGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTTCAGTCTGATTTGAAAGCTCATCAAAAGACTTGTGGCACTAGGGAATACAAATGTGATTGTGGAACTCTCTTTTCCAGGTTTTTCTCTAAATCATATCATCTTTAA 423 41.37 PNAEVIALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTGAEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHQKTCGTREYKCDCGTLFSRFFSKSYHL* 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18331491 18331915 - CsaV3_7G028970.1 Csa07g01808 537371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01808 140 Pfam Zinc-finger double-stranded RNA-binding 19 41 IPR022755 -
Csa07g01808 140 Gene3D Classic Zinc Finger 73 140 - -
Csa07g01808 140 Gene3D Classic Zinc Finger 2 66 - -
Csa07g01808 140 SMART c2h2final6 19 41 IPR013087 -
Csa07g01808 140 SMART c2h2final6 60 90 IPR013087 -
Csa07g01808 140 SMART c2h2final6 95 115 IPR013087 -
Csa07g01808 140 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Csa07g01808 140 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 1 132 - -
Csa07g01808 140 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 132 - -
Csa07g01808 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 41 IPR013087 -
Csa07g01808 140 SUPERFAMILY beta-beta-alpha zinc fingers 18 116 IPR036236 -
Csa07g01808 140 Pfam Zinc finger, C2H2 type 96 116 IPR013087 -
Csa07g01808 140 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 123 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01808 Csa-Chr7:18331491 Csa02g02036 Csa-Chr2:18764907 2.63E-87 dispersed
Csa07g01808 Csa-Chr7:18331491 Csa06g03225 Csa-Chr6:27277593 7.86E-85 transposed
Csa07g01808 Csa-Chr7:18331491 Csa03g03266 Csa-Chr3:29869314 8.11E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32351 PF12171 zf-C2H2_jaz 2.80E-05 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01808 - - bhj:120069139 283.493