Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01812 ATGAGGAGAAAATCCAAAACCCTAAGGACCACGATGGGGGCGAGGAGGAAGAAGATGAAAGGGACAGTGACGAGGCACTTGCAGGTTCAGTTAGGGAAAGTTTCACTTGCTCCTCTTCACCTCAACCGCTCCTCTTCCTCCGCTCTCTGCTTCCCGAGCTTGCCTGAATCTGAACCTCCGTCCACGGTCAACTTTTCTGATCCTCTTCCTTCCTCATCTCATAACTTTGAGGACAGAGATTTCATTCTTAGCCAAGACTTCTTCTGTACCCCTGATTATATCACCCCGGATAATCAAAATTTGTTGAATGGAGTGGATAGCAACAAGGAATGCATTCCCTGCCCCAAATCTCCAGAGAAGGTTAATACTGTTAAAACTAAGAGAAAAATACATGAAAATGTTTTAGTACGTCCCCTGAGTCCGAGTTTGTCTGGCTGCGAACAAGTTGTGGAACTTGGAAATGACATTTTTGGATCAGATGATGTGGATATGGAGAAAGAGACCACGGCCATGCCGAAGAAAGAAAACTATGTATCTCAATCTGCAGTTGCTCTTCGCTGTCGAGTTATGCCTCCTCCTTGCATGAAGAACCCATACTTGAAAGATGCTTCAGATGTAGGTGTAGATCCATTTGGCAATCAACGAACTAAATGTGCAGGATTTTTTCCTGCGTTATTTAGTGGAGATGGTCTTTCAAGATATCACACAGATTTTCATGAGATAAAGCTAATAGGAACTGGAAATTTTAGCCGTGTCTTCAAGGTGTTAAAGAGAATTGATGGCTGCTTATATGCTGTTAAACAAAGCACAAGACCATTGAATCAAGACACGGAAAGGAGGAGAGCTTTGATGGAGGTTCAAGCTTTGGCAGCTTTAGGGGCTCATGAAAACATTGTTGGATACTATACTTCATGGTTTGAAAATGAACAACTCTACATTCAAATGGAGCTCTGTGATTGTAGTTTATCAATGGGCAGGTATTCTCACCCATTCTCTGAAGTAGATGCGCTAAGAGCCTTGTATCAGATTGCAAAGGCATTGCTATTTGTGCACGAGAAAGGAATAGCTCATTTAGATGTGAAACCTGACAATATTTATATCAAAGATGGTGTCTATAAACTTGGTGATTTTGGGTGTGTTACCCTTCTTGATAAGAGTCTGCCTATTGAGGAGGGTGATGCACGCTATATGCCTCAAGAAATTCTGAATGAAAGATATGATTATCTTGATAAAGTTGATATTTTCTCCTTGGGAGCTGCTATTTATGAGATTGTCAGGGGATTCACATTACCAGAAACGCATTTCATGAACCTTAAGGAGGGAAAATTGCCACTCCTTCCTGGTCATTCATTGCAATTCCAAAACTTAATCAAGGCTATGGTGGATCCCGACCCATCACGGCGTCCTTCGGCAAGGGAAGTTATTGAGAATCCGATATTTGATAAGGTCAGAACTCACAAACAATCATAG 1470 41.9 MRRKSKTLRTTMGARRKKMKGTVTRHLQVQLGKVSLAPLHLNRSSSSALCFPSLPESEPPSTVNFSDPLPSSSHNFEDRDFILSQDFFCTPDYITPDNQNLLNGVDSNKECIPCPKSPEKVNTVKTKRKIHENVLVRPLSPSLSGCEQVVELGNDIFGSDDVDMEKETTAMPKKENYVSQSAVALRCRVMPPPCMKNPYLKDASDVGVDPFGNQRTKCAGFFPALFSGDGLSRYHTDFHEIKLIGTGNFSRVFKVLKRIDGCLYAVKQSTRPLNQDTERRRALMEVQALAALGAHENIVGYYTSWFENEQLYIQMELCDCSLSMGRYSHPFSEVDALRALYQIAKALLFVHEKGIAHLDVKPDNIYIKDGVYKLGDFGCVTLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGAAIYEIVRGFTLPETHFMNLKEGKLPLLPGHSLQFQNLIKAMVDPDPSRRPSAREVIENPIFDKVRTHKQS* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18368398 18372844 - CsaV3_7G029010.1 Csa07g01812 537375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01812 489 SUPERFAMILY Protein kinase-like (PK-like) 231 484 IPR011009 -
Csa07g01812 489 Pfam Protein kinase domain 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01812 489 ProSitePatterns Protein kinases ATP-binding region signature. 244 267 IPR017441 GO:0005524
Csa07g01812 489 PANTHER BNAA08G27310D PROTEIN 19 396 - -
Csa07g01812 489 PANTHER BNAA08G27310D PROTEIN 409 485 - -
Csa07g01812 489 ProSiteProfiles Protein kinase domain profile. 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01812 489 SMART serkin_6 238 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01812 489 Gene3D Phosphorylase Kinase; domain 1 228 316 - -
Csa07g01812 489 Gene3D Transferase(Phosphotransferase) domain 1 317 485 - -
Csa07g01812 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 19 396 - -
Csa07g01812 489 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 409 485 - -
Csa07g01812 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 355 367 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01812 Csa-Chr7:18368398 Csa03g01212 Csa-Chr3:9357402 1.29E-22 dispersed
Csa07g01812 Csa-Chr7:18368398 Csa07g01695 Csa-Chr7:17473998 2.11E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78502 PF00069 Pkinase 5.40E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01812 K06632 - csv:101213255 996.112