Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01869 ATGTACGGCCTGAGAAACAGAGCTCAAATCTCTTCAAACCCCACCTCCATTTCCACCATTTCCACCATTTCCCCTTTCTTCTTCATCTTCTTCCTCTTCTCCTTCAAACCCATTTCTTCAAATCCCCAAGTCCACCAAACTGCTCGATCCCTTTGCAATGGCACTCTCTTCCCAGACCTCTGTTTCTCTAAACTCTCTTCTTTTCCCCAATTGGCTTCCCTCTCCCCGGAAAAGCTCGCCGGCAGTGCCCTCAACTTCACTTCCCGTGAGGTCCTCCTTGCCTACACCAATTGCACCAACCTCAAGACTCACCTTTACAGTGGCCTAAATCCCACCGACCGCCACGCCCTCGACGACTGTCTTGAGCTTCTCGACGGCAGCATTGCAGAGCTCAAAGCTTCGATCTTCGATCTGGCGCCGTCGCAATCCCCTGCTCTTCACTCCCACGATTTGTTGACATTGGTCAGCGCCGCCATGACCAACCACCGAACTTGTGTTGATGGGTTTTATAATAGTTCGGGAACTGTGAGGAGCAGGGTGGAACTTTATTTGGGGAAAATCGGACAACATTTAAGTATTGATTTGGCGATGTTGAAGAAAATCCCTGGAGTTAATAGGGCTACGGGGGTAGATCAGGAGATGTTGCCGGAGTATGGGGCAGTCAAAGGTGGGTTTCCGAAGTGGGTTTCGGTTAAGGATCGGAGATTGTTGCAGGCGGCAGTGAATGAGACGAAGTTCAATATGGTAGTGGCGAAGGATGGGTCCGGGAATTTCACGACTGTGAGCGAGGCCGTGGCCGCCGCTCCGAATGCGAGCACCACCAGGTTTGTAATATACATAAAAGCAGGGGCGTATTTTGAGAACGTGGAAATAGGAAGGGCAAAGTCAAACTTGATGTTCGTCGGCGACGGAATCGGAAAGACGCTGATAAAGGCCGACCGGAATGTCGTCGACGGCTGGACTACTTTCCGATCAGCCACCGTTGCGGTGGTTGGCACTGGGTTCATAGCAAAAGGCATAACATTTGAGAATTATGCGGGTCCAAGCAAGCACCAAGCTGTAGCCTTACGAAGCAACTCTGACTTCTCAGCATTTTACCAATGTAGCTTCATTGGCTATCAAGACACTCTCTACGTTCACTCCCTTCGTCAATTCTACCGCGATTGTGATGTCTATGGTACCATTGATTTCATTTTTGGTAACGCTGCCGTTGTTTTCCAAAATTGCAACCTTTATGCTCGGAAACCCAATTCAAATCAACGCAACATATTCACTGCTCAAGGTCGCGAAGACCCCAATCAAAACACTGGAATCTCAATCCTCAACTGTAAGGTTGAAGCTGCCTCTGACCTAATCCCAGTTCTTTCCTCGTTTAGAACTTACTTGGGTCGTCCTTGGAAGTTGTACTCGAGGACAGTTTTTCTCCGATCGTTTATCGGACAATTGATTGAACCGGTTGGATGGCTTGAGTGGAATGGGACATTTGCATTGGATACTTTGTATTATGGGGAGTATTTAAATAGGGGGCCTGGTTCAAATACAACCATGCGAGTAACTTGGCCGGGTTATCGAGTTATTACTAACGCAACAGAAGCGAGTCAATTTACGGTTGAGAGATTTATACAAGGTAGCTCGTGGTTGAACTCGACCGAGATTCCTTTCTTCTCCGGTCTGACTCCACCTTAG 1686 48.4 MYGLRNRAQISSNPTSISTISTISPFFFIFFLFSFKPISSNPQVHQTARSLCNGTLFPDLCFSKLSSFPQLASLSPEKLAGSALNFTSREVLLAYTNCTNLKTHLYSGLNPTDRHALDDCLELLDGSIAELKASIFDLAPSQSPALHSHDLLTLVSAAMTNHRTCVDGFYNSSGTVRSRVELYLGKIGQHLSIDLAMLKKIPGVNRATGVDQEMLPEYGAVKGGFPKWVSVKDRRLLQAAVNETKFNMVVAKDGSGNFTTVSEAVAAAPNASTTRFVIYIKAGAYFENVEIGRAKSNLMFVGDGIGKTLIKADRNVVDGWTTFRSATVAVVGTGFIAKGITFENYAGPSKHQAVALRSNSDFSAFYQCSFIGYQDTLYVHSLRQFYRDCDVYGTIDFIFGNAAVVFQNCNLYARKPNSNQRNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSSFRTYLGRPWKLYSRTVFLRSFIGQLIEPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTMRVTWPGYRVITNATEASQFTVERFIQGSSWLNSTEIPFFSGLTPP* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18705097 18708013 - CsaV3_7G029580.1 Csa07g01869 537432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01869 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 49 202 IPR035513 -
Csa07g01869 561 TIGRFAM PME_inhib: pectinesterase inhibitor domain 26 200 IPR006501 GO:0004857
Csa07g01869 561 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Csa07g01869 561 SMART PMEI_2 43 197 IPR006501 GO:0004857
Csa07g01869 561 SUPERFAMILY Pectin lyase-like 245 557 IPR011050 -
Csa07g01869 561 CDD PMEI-like_3 50 203 - -
Csa07g01869 561 Pfam Plant invertase/pectin methylesterase inhibitor 49 180 IPR006501 GO:0004857
Csa07g01869 561 PANTHER PECTINESTERASE 45 555 - -
Csa07g01869 561 Gene3D - 241 558 IPR012334 -
Csa07g01869 561 PANTHER PECTINESTERASE 45 555 - -
Csa07g01869 561 Pfam Pectinesterase 247 543 IPR000070 GO:0030599|GO:0042545
Csa07g01869 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 203 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00005 Csa-Chr3:181308 Csa07g01869 Csa-Chr7:18705097 2.35E-152 dispersed
Csa03g01994 Csa-Chr3:15703537 Csa07g01869 Csa-Chr7:18705097 9.54E-169 dispersed
Csa05g00051 Csa-Chr5:235332 Csa07g01869 Csa-Chr7:18705097 3.57E-175 dispersed
Csa05g01747 Csa-Chr5:20798288 Csa07g01869 Csa-Chr7:18705097 2.48E-94 dispersed
Csa05g02010 Csa-Chr5:23451164 Csa07g01869 Csa-Chr7:18705097 2.95E-158 dispersed
Csa06g03534 Csa-Chr6:28782584 Csa07g01869 Csa-Chr7:18705097 9.94E-153 dispersed
Csa07g01869 Csa-Chr7:18705097 Csa07g02304 Csa-Chr7:21412382 4.12E-166 dispersed
Csa07g01869 Csa-Chr7:18705097 Csa07g01870 Csa-Chr7:18722250 3.50E-136 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01869 K01051 - csv:101205557 1088.17