Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01870 ATGGCTGCCGGAACCACCGCCACCGCCGCCGCATTCTATGTCCTTCTAATCCTCATTTCACTTTACATCACCACTTCCGCCTCCCCCACCGGTTCGGTTTGCAGCTCAACTCCAGACCCTTCCTATTGCAAATCGGCCCTCCCGAACCAAACCGGAAATGTGTACTCGTACGGACGGTCGTCATTCAGAAAGTCACTGTCGTCCTCACAGAAGTTCCTCCGGCTAGTGGAGAAGCACCTCCGGTCCCGATCGTCGCTGACGGTGCCGGCGGTGAGGGCGTTGGAGGACTGCCTGCTGCTGGCGGGACTGAACATCGATTACTTGAAGACGTCGTTCCAGACGGTGAACACGACGAGCAGAGTATTGACGGAGATGAAGGCGGACGATGTGCAGAGTCTGCTGAGTGCGATATTGACGAATCAACAGACTTGTTTGGACGGAATTAAGGCGACGGCGGGTTCTTGGTCGCTTAAAAATGGCCTTTCTCAACCACTTGCTTCTGACACCAAGCTGTACTCTCTGTCTTTGGCCTTCTTCACAAAAGGTTGGGTTCCGAAGAAGAAGAAAAGGCCGACATGGAAAGCCGCGGGAAGACAAGGCGGGTTTAGAAACGGACGAATGTCACTCAAAATGTCCAGCAGAACCCAAGCCATTTACGAGAAGGCTACCCGCCGGAATCTGCTGCAGACTGACGACGGCGGAGACGACGATCAGATTAAGGTCAGGGACATCGTCGTTGTCAGTCAAGACGGCAGCGGAAATTTCACAACCATCAACGAGGCCATTGCGGCAGCGACCAACAACTCTGCTCCTACGGACGGGTATTTCTTGATCTTCGTGTCCGCGGGAGTTTATGAAGAGTATGTGTTAGTTGCGAAGAACAAGAGATACTTGATGATGATCGGAGATGGCATTAATCAGACCATCGTCACCGGAAATCGGAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACTTTTGCGGTGGTCGGACCTGGGTTCGTAGCAGTAAACATGACATTCCGAAACACCGCAGGAGCCATAAAGCACCAAGCCGTCGCCGTCCGTAACGGCGCCGACTTATCAACATTCTACCTCTGTAGCTTCGAAGCATACCAAGACACCTTATACACTCATTCCCTCCGCCAATTCTACCGCGACTGTGACATCTACGGCACTGTCGACTTCATCTTCGGCAATGCTGCCGTCGTCTTCCAGAACTGCAACATTTACCCACGCCTTCCCATGTCCAACCAGTTCAACGCCATCACCGCCCAAGGCCGGACCGACCCAAATCAGAACACCGGCACCTCGATCTACAATTGCCGAATCACGGCGGCAGACGATCTGGCGAACAACAGCGACGCCGGCGTGAAGACTTTCCTGGGACGGCCGTGGAAGGAGTACTCGAGGACAGTTTATATGCAAAGCTTTATGGATGATTTGATTAATCCGGCGGGATGGAGAGCTTGGGATGGGGATTTTGCTTTAAACACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCAGAGAGGGTTACCTGGGCGGGGTTTCATTTGATTAATGATACTGATGCTGGGAATTTCACGGCCGGGAATTTTGTGTTGGCGGATGATTGGTTGCCGCAGACGGGCGTTCCATACGATAGCGGCCTGACGGAGTAG 1683 53.12 MAAGTTATAAAFYVLLILISLYITTSASPTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSFRKSLSSSQKFLRLVEKHLRSRSSLTVPAVRALEDCLLLAGLNIDYLKTSFQTVNTTSRVLTEMKADDVQSLLSAILTNQQTCLDGIKATAGSWSLKNGLSQPLASDTKLYSLSLAFFTKGWVPKKKKRPTWKAAGRQGGFRNGRMSLKMSSRTQAIYEKATRRNLLQTDDGGDDDQIKVRDIVVVSQDGSGNFTTINEAIAAATNNSAPTDGYFLIFVSAGVYEEYVLVAKNKRYLMMIGDGINQTIVTGNRSVVDGWTTFNSATFAVVGPGFVAVNMTFRNTAGAIKHQAVAVRNGADLSTFYLCSFEAYQDTLYTHSLRQFYRDCDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIYNCRITAADDLANNSDAGVKTFLGRPWKEYSRTVYMQSFMDDLINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVTWAGFHLINDTDAGNFTAGNFVLADDWLPQTGVPYDSGLTE* 561
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 18722250 18725416 + CsaV3_7G029590.1 Csa07g01870 537433
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01870 560 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 181 IPR035513 -
Csa07g01870 560 PANTHER PECTINESTERASE 15 558 - -
Csa07g01870 560 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Csa07g01870 560 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 7-RELATED 15 558 - -
Csa07g01870 560 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 181 IPR035513 -
Csa07g01870 560 SMART PMEI_2 24 178 IPR006501 GO:0004857
Csa07g01870 560 Pfam Pectinesterase 245 542 IPR000070 GO:0030599|GO:0042545
Csa07g01870 560 Gene3D - 238 558 IPR012334 -
Csa07g01870 560 Pfam Plant invertase/pectin methylesterase inhibitor 32 177 IPR006501 GO:0004857
Csa07g01870 560 CDD PMEI-like_3 32 183 - -
Csa07g01870 560 SUPERFAMILY Pectin lyase-like 243 557 IPR011050 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01545 Csa-Chr2:14628980 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa03g04485 Csa-Chr3:39085066 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa05g02685 Csa-Chr5:27748797 Csa07g01870 Csa-Chr7:18722250 0 dispersed
Csa07g01870 Csa-Chr7:18722250 Csa03g01619 Csa-Chr3:12092582 2.55E-136 dispersed
Csa07g01869 Csa-Chr7:18705097 Csa07g01870 Csa-Chr7:18722250 3.50E-136 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01870 K01051 - csv:101205321 1103.58