Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01874 ATGTCTTCCGATTCTCATGCCCCTACTCCAAGGGGTCTTCTCTGTAATGCTGGAGCTGGTGCTGCTGCTGGTGTTCTTGCTGCTACGTTTGTGTGCCCTTTGGATGTCATCAAGACTAGATTTCAGGTTCATGGACTGCCAAACATCGGTAAAGGGAGTCTTATAGTTGGCAGTCTGCAACAAATTTTTCATAAGGAGGGGCTACGTGGAATGTATAGAGGTCTTGCACCTACTGTGCTTGCATTACTGCCTAACTGGGCTGTTTATTTCACAATATATGGGCAGCTTAAAACCTTTCTTGCCTCTGATCATGAACATTGTCAACTTTCAATAGGTGCTAATATGATGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACCAATCCTCTATGGGTAGTCAAGACCAGGCTTCAGACACAAGGAATGAAATCTGGTGTGCTACCATATAGAAACACAGTGTCTGCCTTGAAGAGAATAGCATCTGAAGAAGGAATTCGTGGATTGTACAGTGGTCTTGTGCCTGCTTTGGCCGGTGTAAGTCACGTCGCGATTCAGTTTCCAACATATGAAAAAATTAAAAGTTATTTGGCTAGAAGAGACAATACGACAACGGACAAACTCACTGCACGTGATGTTGCGGTTGCCTCATCTGTCTCTAAGATATTTGCTTCCACGTTGACCTATCCACATGAGGTCGTACGATCCAGGCTTCAGGAACAGGGGTTTCACTCTGAAAAGCGTTATTCTGGCGTAGCCGATTGCGTAAAGAAAGTATTTCAGCAAGATGGTCTTCCCGGTTTCTATCGAGGGTGTGCAACCAACCTTCTCAGGACAACGCCTGCTGCTGTCATCACATTTACCAGCTTTGAAATGATTCACCGATTTCTTGCCAACTTATTTCCTCCCGATCCACATCCACACACATTATGA 936 45.3 MSSDSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPNIGKGSLIVGSLQQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTIYGQLKTFLASDHEHCQLSIGANMMAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALKRIASEEGIRGLYSGLVPALAGVSHVAIQFPTYEKIKSYLARRDNTTTDKLTARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVADCVKKVFQQDGLPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLANLFPPDPHPHTL* 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18744187 18748635 - CsaV3_7G029630.1 Csa07g01874 537437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01874 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
Csa07g01874 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 99 IPR018108 -
Csa07g01874 311 Gene3D Mitochondrial carrier domain 1 105 IPR023395 -
Csa07g01874 311 Gene3D Mitochondrial carrier domain 106 301 IPR023395 -
Csa07g01874 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 109 197 IPR018108 -
Csa07g01874 311 PANTHER NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC 1 310 - -
Csa07g01874 311 SUPERFAMILY Mitochondrial carrier 13 293 IPR023395 -
Csa07g01874 311 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 1 310 IPR044712 GO:0006862|GO:0055085
Csa07g01874 311 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Csa07g01874 311 Pfam Mitochondrial carrier protein 15 102 IPR018108 -
Csa07g01874 311 Pfam Mitochondrial carrier protein 215 299 IPR018108 -
Csa07g01874 311 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085
Csa07g01874 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Csa07g01874 311 PRINTS Mitochondrial carrier protein signature 74 94 IPR002067 GO:0055085
Csa07g01874 311 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Csa07g01874 311 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g02065 Csa-Chr5:23954438 Csa07g01874 Csa-Chr7:18744187 1.89E-136 dispersed
Csa06g03287 Csa-Chr6:27571241 Csa07g01874 Csa-Chr7:18744187 1.96E-17 dispersed
Csa07g01874 Csa-Chr7:18744187 Csa06g01528 Csa-Chr6:12805917 1.87E-38 dispersed
Csa07g01874 Csa-Chr7:18744187 Csa02g02378 Csa-Chr2:21122110 3.12E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01874 K15115 - csv:101204681 601.668