Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01878 ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGATGCCGTGAAGAGCGTCCGTGCCCCTCTATCCTCTTCGGCAGCTGGTTCCAGTGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCTTCTTATGCTCCTCTCAGCACTGAAGATCCAGGACCTTCGAGCAGCGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGAAGGAAGATGGCAGAGTTAGTTAAGGCTCATTCCAAAGCTTTAATGCCTTCTTTTGCTGATGGCGAAGAAGACGAGCATACGATTGAGGCACTTACGCTAGAGATTACTAATCTTTTGAAAACCTCAGAGAAGAGGTTGAAGAAAATTTCTAGTACAGGGTCTTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGATCTTCGTAGAAGACAATCAATGTATTTGAAACGTCTACAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGAAACCGAGCTCTCCAGGAGGATGACGGATATGATGAATTTGGAACAAATGAAAATCAAACGATGACATTAGATGGGAAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTAAAATCCGTAAATGAGCTTGCCCAAATTATGAAGGATCTCTCAACCCTTGTCATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTGAAACAACTTCAAAAGGCAGAGAAGACACAGAAAAATGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCGTAATGCTGGTTCTTTTGATACTAAAGGAGATAATTATGTAA 963 41.95 MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGEEDEHTIEALTLEITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRALQEDDGYDEFGTNENQTMTLDGKHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGLKQLQKAEKTQKNGGMVKCATVLVIMCFVMLVLLILKEIIM* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18758684 18763013 + CsaV3_7G029670.1 Csa07g01878 537441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01878 320 PANTHER SYNTAXIN OF PLANTS PROTEIN 1 315 - -
Csa07g01878 320 CDD SNARE_syntaxin16 227 285 - -
Csa07g01878 320 SMART tSNARE_6 216 286 IPR000727 -
Csa07g01878 320 SMART SynN_4 67 182 IPR006011 GO:0016020
Csa07g01878 320 Pfam SNARE domain 260 312 IPR000727 -
Csa07g01878 320 Gene3D - 73 278 - -
Csa07g01878 320 SUPERFAMILY t-snare proteins 72 279 IPR010989 GO:0016020|GO:0016192
Csa07g01878 320 MobiDBLite consensus disorder prediction 1 33 - -
Csa07g01878 320 ProSitePatterns Syntaxin / epimorphin family signature. 230 269 IPR006012 GO:0005484|GO:0006886|GO:0016020
Csa07g01878 320 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 224 286 IPR000727 -
Csa07g01878 320 PANTHER SYNTAXIN 1 315 IPR045242 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00478 Csa-Chr2:3398835 Csa07g01878 Csa-Chr7:18758684 4.26E-140 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01878 K08489 - csv:101204192 598.971