Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g01878 | ATGGCGACGAGGAATCGAACTGCACAGTTTAGAAGGCACAGGGATGCCGTGAAGAGCGTCCGTGCCCCTCTATCCTCTTCGGCAGCTGGTTCCAGTGGACCGGTTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCTTCTTATGCTCCTCTCAGCACTGAAGATCCAGGACCTTCGAGCAGCGATGCATTTATGGTGGGTCTACCTCCAGCTTGGGTGGATGATTCTGAAGAAATAACTGTTAATATACAGAAAATTCGAAGGAAGATGGCAGAGTTAGTTAAGGCTCATTCCAAAGCTTTAATGCCTTCTTTTGCTGATGGCGAAGAAGACGAGCATACGATTGAGGCACTTACGCTAGAGATTACTAATCTTTTGAAAACCTCAGAGAAGAGGTTGAAGAAAATTTCTAGTACAGGGTCTTCAGAGGATATTAACATCAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAGAATCTTTCTATGGATCTTCGTAGAAGACAATCAATGTATTTGAAACGTCTACAGCAGCAAAAGGAGGGACATGATGGAATTGATTTGGAGATAAATTTGAATGGAAACCGAGCTCTCCAGGAGGATGACGGATATGATGAATTTGGAACAAATGAAAATCAAACGATGACATTAGATGGGAAGCACATTCAGGGAAGGGAGAAAGAGATTAAACAGGTTGTAAAATCCGTAAATGAGCTTGCCCAAATTATGAAGGATCTCTCAACCCTTGTCATAGACCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTGAAACAACTTCAAAAGGCAGAGAAGACACAGAAAAATGGAGGAATGGTGAAGTGTGCAACAGTGCTTGTTATTATGTGTTTCGTAATGCTGGTTCTTTTGATACTAAAGGAGATAATTATGTAA | 963 | 41.95 | MATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPVIEMVSSSLLRSKRSSSYAPLSTEDPGPSSSDAFMVGLPPAWVDDSEEITVNIQKIRRKMAELVKAHSKALMPSFADGEEDEHTIEALTLEITNLLKTSEKRLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQKEGHDGIDLEINLNGNRALQEDDGYDEFGTNENQTMTLDGKHIQGREKEIKQVVKSVNELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGLKQLQKAEKTQKNGGMVKCATVLVIMCFVMLVLLILKEIIM* | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 18758684 | 18763013 | + | CsaV3_7G029670.1 | Csa07g01878 | 537441 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g01878 | 320 | PANTHER | SYNTAXIN OF PLANTS PROTEIN | 1 | 315 | - | - | |
Csa07g01878 | 320 | CDD | SNARE_syntaxin16 | 227 | 285 | - | - | |
Csa07g01878 | 320 | SMART | tSNARE_6 | 216 | 286 | IPR000727 | - | |
Csa07g01878 | 320 | SMART | SynN_4 | 67 | 182 | IPR006011 | GO:0016020 | |
Csa07g01878 | 320 | Pfam | SNARE domain | 260 | 312 | IPR000727 | - | |
Csa07g01878 | 320 | Gene3D | - | 73 | 278 | - | - | |
Csa07g01878 | 320 | SUPERFAMILY | t-snare proteins | 72 | 279 | IPR010989 | GO:0016020|GO:0016192 | |
Csa07g01878 | 320 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Csa07g01878 | 320 | ProSitePatterns | Syntaxin / epimorphin family signature. | 230 | 269 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Csa07g01878 | 320 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 224 | 286 | IPR000727 | - | |
Csa07g01878 | 320 | PANTHER | SYNTAXIN | 1 | 315 | IPR045242 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa02g00478 | Csa-Chr2:3398835 | Csa07g01878 | Csa-Chr7:18758684 | 4.26E-140 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g01878 | K08489 | - | csv:101204192 | 598.971 |