Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01905 ATGTCAGCCATGAAAGATTCCGGGCCTCTAGACTTCAGCGCCGAAAGGGTGCTCGCAAAGGAGTTCCTAGCCAACTTTGCCGATGCAAATGGTGAAGCGAAGTACTTAAACATTCTGCAAGAGGTTGCAAATCGCAGAGTTCGTGCAGTTCAAATTGATCTAGAGGATGTGTTTAATTATAAGGACTTGGATGAGGATTTTCTCAGACGTATTACAGAAAACACCCGGCGTTATATTGGGATTTTTGCTGATGCTATTGATGAGCTCATGCCTGAGCCAACAGAGGCGTTTATTGATGATGATCATGACATATTAATGACACAAAGGTCTGATGATGGACCAGATACGGTTGATAACCCTGACCCACGCCAAAGAATGCCTCCGGAAATTAAACGTTACTTTGAAGTTTACATTAGAGCATCTTCAAAGGGTCGTCCATTTACCATAAGAGAGGTCAAAGCGTCATATATTGGTCAACTCGTAAGGATATCTGGAATTGTGACACGCTGTTCGGATGTTAAACCATTGATGCAAGTGGCAGTTTATACATGCGAAGACTGTGGTTTCGAGATATACCAGGAGGTAACAGCTCGAGTCTTCATGCCTCTATTTGAGTGCCCATCTCAGCGTTGTAGAACAAACCAAACGAAAGGCAACTTAATTCTTCAACTTAGAGCATCCAAATTTCTGAAGTTTCAGGAGGCCAAACTGCAAGAGTTAGCTGAGCATGTTCCAAAAGGTCATATTCCTCGGACAATGACTGTTCATCTCAGGGGTGAACTAACAAGGAAGGTAGCTCCAGGTGATGTTGTTGAACTGTCAGGGATTTTTCTTCCTATTCCTTATACGGGGTTCAGGGCAATGCGTGCTGGGTTGGTTGCTGATACATTCTTAGAGGCCATGTCTATCACCCATTTCAAGAAAAAATACGAGGACTATGAACTTAGGGGAGATGAGGAGGAACTAATTGCACGTTTGGCTGAGGATGGCGATATTTACAACAAACTGGCACGTTCACTGGCACCTGAAATTTTTGGCCATGAAGATATTAAAAAAGCTTTACTGCTACTTCTTGTTGGCGCTCCTCATAGGAAGTTGAAAGATGGGATGAAGATTAGAGGAGACTTGCATATATGTTTGATGGGTGATCCTGGAGTTGCAAAGAGTCAACTTCTTAAACACATCATCAATGTTGCTCCCAGGGGAGTCTACACAACTGGCAAAGGGAGCAGTGGTGTTGGTTTAACTGCTGCTGTTCAGAAGGATCCTGTCACAAATGAGATGGTCCTTGAAGGAGGAGCACTGGTGTTGGCTGACATGGGAATATGTGCAATTGATGAATTTGACAAGATGGAAGAGTCTGATCGTACAGCAATTCATGAAGTCATGGAGCAACAAACTGTGAGCATTGCCAAGGCTGGAATTACCACGTCTCTAAATGCCAGGACTGCTGTCCTTGCTGCGGCCAATCCAGCATGGGGAAGATATGACCTACGTAGAACTCCAGCCGAAAACATCAACCTTCCTCCAGCTCTATTATCGAGATTTGATCTTCTTTGGTTGATCCTAGATCGAGCTGATATGGATAACGATCTTGAAATGGCTAGACACGTTGTCTATGTCCATCAGACTAGAGAATCACCTGCTCTTGGCTTCACCCCACTTGAATCATCTGTTCTTCGAGCTTATATTTCAGCGGCAAGAAGATTGTCTCCTTACGTTCCCAAGGATCTGGAGGAGTACATTGCCAGTGCCTATTCCAGCATTCGGCAGGAAGAAGCTAAATCTAAAACTCCTCATTCGTACACCACAGTGAGAACTTTACTAAGCATTCTCCGGATATCAGCTGCTCTAGCGAGACTTAGATTCTCTGAGACCGTGGCTCAGAGTGATGTTGATGAGGCCCTAAGGTTAATGCAAATGTCAAAATTTTCTCTATACTCAGACGACCGTCAAAAATCTGGTCTTGATGCCATCTCAGATATTTATTCAATCTTACGTGATGAAGCTTCCAGAACCAATAAAATGGACGTGGGCTATGCACATGCCCTTAACTGGATTTCTAGGAAGGGATACAGCGAAGCTCAGCTAAAAGAATGTTTGGAGGAGTATGCAGCATTGAATGTGTGGCAAATACATCCACACACCTTCGACATTCGGTTTATAGATGCTTGA 2175 43.86 MSAMKDSGPLDFSAERVLAKEFLANFADANGEAKYLNILQEVANRRVRAVQIDLEDVFNYKDLDEDFLRRITENTRRYIGIFADAIDELMPEPTEAFIDDDHDILMTQRSDDGPDTVDNPDPRQRMPPEIKRYFEVYIRASSKGRPFTIREVKASYIGQLVRISGIVTRCSDVKPLMQVAVYTCEDCGFEIYQEVTARVFMPLFECPSQRCRTNQTKGNLILQLRASKFLKFQEAKLQELAEHVPKGHIPRTMTVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSITHFKKKYEDYELRGDEEELIARLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINVAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMEESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDNDLEMARHVVYVHQTRESPALGFTPLESSVLRAYISAARRLSPYVPKDLEEYIASAYSSIRQEEAKSKTPHSYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQKSGLDAISDIYSILRDEASRTNKMDVGYAHALNWISRKGYSEAQLKECLEEYAALNVWQIHPHTFDIRFIDA* 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 18948862 18955110 - CsaV3_7G029940.1 Csa07g01905 537468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01905 724 ProSitePatterns MCM family signature. 441 449 IPR018525 GO:0003677|GO:0005524|GO:0006260
Csa07g01905 724 Gene3D - 149 277 IPR012340 -
Csa07g01905 724 Pfam MCM P-loop domain 320 542 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 Gene3D - 15 106 - -
Csa07g01905 724 Gene3D - 317 649 IPR027417 -
Csa07g01905 724 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 342 653 IPR027417 -
Csa07g01905 724 CDD MCM7 335 642 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 Pfam MCM N-terminal domain 20 138 IPR027925 -
Csa07g01905 724 Pfam MCM AAA-lid domain 559 642 IPR041562 -
Csa07g01905 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 42 702 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 Gene3D - 176 230 - -
Csa07g01905 724 SUPERFAMILY Nucleic acid-binding proteins 19 300 IPR012340 -
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 126 138 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 164 175 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 182 193 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 199 211 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein 7 signature 291 301 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Csa07g01905 724 SMART mcm 145 644 IPR031327 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 373 388 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 433 447 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 461 474 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 485 497 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PRINTS Mini-chromosome maintenance (MCM) protein family signature 512 520 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 Pfam MCM OB domain 149 279 IPR033762 -
Csa07g01905 724 ProSiteProfiles MCM family domain profile. 332 538 IPR001208 GO:0003677|GO:0005524|GO:0032508
Csa07g01905 724 PANTHER DNA REPLICATION LICENSING FACTOR MCM7 42 702 IPR008050 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03777 Csa-Chr6:30028617 Csa07g01905 Csa-Chr7:18948862 1.57E-112 dispersed
Csa07g00021 Csa-Chr7:360064 Csa07g01905 Csa-Chr7:18948862 9.43E-114 dispersed
Csa07g00576 Csa-Chr7:4190546 Csa07g01905 Csa-Chr7:18948862 5.27E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01905 K02210 - csv:101219064 1419.06