Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01941 ATGGTGGCTGAAGCCGAGGTTGTTGTTTGTTCGAAGAGCCTCCCGGTTTTGGAGGTCCCGTATTTTGGTAAAGAGACTTGTCTTGTTGATGAAATTGAGTCCATCGATGGTGGGATTTCGATTGATCCGACTCTTGATCGCGTTCGTGCTTCCGAGTCGGTTTGTTCCAGTTCTCAATCGGATAAACCCATGAAGAAAATTACAGACTCCGAGGTCGATACGGCCAACGGAAGGGAATTTCCGAGCCTCCGGTCGGGAAGTTTTGCTGATATTGGACCTAGGAGATACATGGAAGATGAACATATAAGGATAGATGATTTATCTTCACATTTAGGATCGCTCTTTAAGTTTCCCAAGCCAAGTGCTTTCTATGGGGTGTTTGATGGACATGGAGGTCCTGAAGCCGCAGCTTATATCAGAAAGAATGTTCTTAGACTCTTTTTCGAGGATGTTAGTTTCCCTCAAATTCCAGATATCGATGAAGTCTTGCCGGGGGAGATTGAAACTTGCCTTCGAAAGGCATTTCTTCTTGCTGATCGAGCTCTTGCTGATGATTCCAGTGTCAGCAGCTCATCTGGGACGACGGCCCTGACAGCTCTTGTTCTTGGAAGGCTTTTAATGGTGGCAAATGCTGGAGACTGCCGAGCAGTTCTCAGCCGGAATGGAGAGGCAGTAGATATGTCTCAGGACCATCGGCCGGTATACTCTCTAGAGAAGCAACGAGTTGAAGAGTTGGGTGGCTATGTTGATGGTGGCTATCTCAATGGTGTTTTATCGGTTTCTAGGGCTTTAGGGGATTGGGACATGAAGCTCCCAGATGGTACTCCTTCACCTCTCATTGCAGAACCAGAATGCAGGCAGATGGTTCTTACAGAAGAGGATGAGTTCTTGATCATAGCCTGCGACGGGATATGGGACGTGATGTCAAGCCAGCAAGCAGTCAATGTAGTTCGACAGGGACTCCAACGCCACGACGACCCTGAGCGGTGTGCAAGAGACCTTGTCCTGCAGGCTTTGCGATTAGACTCATTCGATAACCTAACTGTTGTTGTTGTTTGCTTCTCAAGTTTCCATCCCGGCAATTCTCCACTACCGCAGCAGCAAAAGTTACGATACTGCAGTCTCTCAGCACAGGCTCTTTGTAGCTTGCAAAAATGGTTGGATAACAGTGGATGCCAATGA 1182 47.72 MVAEAEVVVCSKSLPVLEVPYFGKETCLVDEIESIDGGISIDPTLDRVRASESVCSSSQSDKPMKKITDSEVDTANGREFPSLRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLFKFPKPSAFYGVFDGHGGPEAAAYIRKNVLRLFFEDVSFPQIPDIDEVLPGEIETCLRKAFLLADRALADDSSVSSSSGTTALTALVLGRLLMVANAGDCRAVLSRNGEAVDMSQDHRPVYSLEKQRVEELGGYVDGGYLNGVLSVSRALGDWDMKLPDGTPSPLIAEPECRQMVLTEEDEFLIIACDGIWDVMSSQQAVNVVRQGLQRHDDPERCARDLVLQALRLDSFDNLTVVVVCFSSFHPGNSPLPQQQKLRYCSLSAQALCSLQKWLDNSGCQ* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19183066 19185416 + CsaV3_7G030300.1 Csa07g01941 537504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01941 393 SUPERFAMILY PP2C-like 79 356 IPR036457 -
Csa07g01941 393 Pfam Protein phosphatase 2C 94 346 IPR001932 -
Csa07g01941 393 CDD PP2Cc 84 354 IPR001932 -
Csa07g01941 393 SMART PP2C_SIG_2 99 354 IPR001932 -
Csa07g01941 393 ProSiteProfiles PPM-type phosphatase domain profile. 84 354 IPR001932 -
Csa07g01941 393 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Csa07g01941 393 SMART PP2C_4 74 352 IPR001932 -
Csa07g01941 393 Gene3D - 60 358 IPR036457 -
Csa07g01941 393 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Csa07g01941 393 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02719 Csa-Chr4:26235116 Csa07g01941 Csa-Chr7:19183066 1.70E-107 dispersed
Csa06g00008 Csa-Chr6:57209 Csa07g01941 Csa-Chr7:19183066 3.63E-123 dispersed
Csa07g01941 Csa-Chr7:19183066 Csa04g02606 Csa-Chr4:25550564 4.82E-42 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01941 K14803 - csv:101216626 755.362