Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01956 ATGGACGATAGCTGTGCTGTGTGTGCCGATACTCTTGAATGGGTTGCCTATGGGTCTTGCGGTCATCGGGATGTTTGCTCCACCTGCGTTGCTCGTCTTCGATTCATTTGTGGTGATCGCCGTTGTTGCATCTGCAAGTCCGAATCTGCTGTCGTGTTTGTCTCTAAGGCCTTGGGAGATTACACAAGGACGATTAACGACTTCACAGTCTTTCCTTCAGAACCAAAAGAGGGTCGTTGTGGATCCTATTGGTATCATGAAGACACACAAGCATTTTTTGATGATGCTGACCACTACAAGATGATAAAAGCAATGTGTAGATTGTCATGCAGTGTGTGTGATAAGATAGGTGAAGATCAACCAAATGATGCCTCAAAGCGCCGAGGAAGATTTCGGAATATTGAGCAGCTAAAGGGTCATTTGTTTCATCGACATAAGTTGTTTATGTGCAGCCTTTGTCTGGAAGGCAGGAAGGTTTTTATTTGTGAGCAGAAGCTATATAATAGGGCACAATTGAATCAGCATATACACACTGGTGACTCTGAGGTGGACGGAAGTGAGAGTGAGAGAGGTGGTTTCACTGGGCACCCTATGTGTGAATTTTGCAGAACTCCATTTTATGGAGATAACGAGTTGTATACTCATATGTCAACTGAGCATTATACATGTCATATATGCCAAAGGCTCCACCCTGGACAATATGAATACTATAAGAATTATGATGACCTAGAGATCCATTTCCGACAAGGACATTTTCTTTGTGAAGATGAAGCCTGCCTTGCTAAGAAGTTTGTTGTGTTCCAATCTGAAGCAGAAATGAAGAGGCACAATACTATTGAACATGGTGGCAAGCTATCTCGATCTAAGCGAAATGCTGCTTTGCAGATACCAACCAGTTTTCGGTATCGAAGAAGTAACGACCAAGATAATCGTCGTGGCAGACGAACATTTCGTCGTGATTCTTCGGATGATCTACTTTCTTTGGCCCTTCAAGAAAGTTTTGAAACAGCCAATGTTGATGACAACAATCATGACCCATTACCTAGCGGACAAGTAGCCTCAGATCAGGAAAATTTAAGCAACGTTGACCCGTTGATTGAATCATTCGAAGCATTAGCAACTACAGATCCTGAATCAGCTTCTCGATACCTTCAAGCCTTGGGCCATTCTAGGAATTCCCAATTGGAGCAATCATCCTTTCCTCCCCTTTCAACTGCATCTAGCAGTAGCCATCCAAAGCCCAATCAGGACAAAGACATTATACATAATAACAGTATGGCAGCTCATCTTCGGCGCCAGAGGAATAATGTGACCGTTCTAAATTCTGCAGGTTGGCCAAAATCAAGTCGTGCCCCAGTGCTACCATCAAATAACTCATCTCAAGCTTGGCCAGCAATAAATTCCAATCATGCAGCTTCAAGCAGTTCTGGGCAGACTAAGGGGGTTGCCACCATTAATAATGGCCCTTCAGTCTCTGCTTATGCAAATGCTGCTCAGATGCATCCAAAGCCTCGATCTACTTCTTCAAGTGGGTCAGGCAGTAGCAGTAGGATCAGCCACTCTGCTTCCGCGCCCAATCTCACCGACATTGCACATACCGAACCATCAGTTAACGAATTCCCTCCAGTATCTGCAGCACATGCACGGAAAGTGCCATCAAGTAGCCAAAGTTCAATGAACATGGAAGATGTCCAGACAGCAAACAAATCTCTAGTTGAAAAGATACGTGCTGCACTTGATTTTGACCAAGATAGATATTCCATTTTTAAAGATATATCTGCACAATATCGTCAGGGTCAGATTGACACGGAAATGTATCTAGACTGCGTGCAACAGTTTGGTTTGTCACATCTTTTGCTTGAGTTGGCTAGGCTCTGTCCTGATCCTCAGAAACAGAAAGAACTTGTGGAGACCTACAACGCTAGTTTTCATAAAGATGTGTTCCCAGTCAATGGTAGGGCCCAAGATAGTATTCAAATTAAAGACAAAAGTAAGGGGAAAAAAGGTAAAGGGAAATCTATAGAAGTTAAAGACAGCAGTTCCAAAGACAAATTAGCAGATAGTATCATGAGCAGTGTTCGGGAATTGCAGTCGAGCTACAGGCCACCAGATGAAGATGTAGAGGTATTATCAAAGGGTGAGTATCGTACTTCGAAAGGGAAACTGAAGATATCTTCTGACGACCAGCAAGGTGGGACAGGAAGACAAAAGAGTCAACCGTCTACTGGTCTATCGAACCAAAGCACTGGGGATGGTGGTGGTGGTGGTGGGGGGAGCAAACAAAAAAAGAAAACTTCCAAGTTTCATAGAGTTCGTTTAGGCGATGGATCGGTTGCTGCACTCTTGGATCTAAAAAACTCCAATCTCGGTTCAGACCCTGACCCAGATGAAAGAGTAGAGGACAGGAACAATGGTGCAGGGGCATTGCCTGTTCGGGGCGTTTGGCGAAATGGAGCCCAAAAGCTCTTCTCCTAG 2475 44.16 MDDSCAVCADTLEWVAYGSCGHRDVCSTCVARLRFICGDRRCCICKSESAVVFVSKALGDYTRTINDFTVFPSEPKEGRCGSYWYHEDTQAFFDDADHYKMIKAMCRLSCSVCDKIGEDQPNDASKRRGRFRNIEQLKGHLFHRHKLFMCSLCLEGRKVFICEQKLYNRAQLNQHIHTGDSEVDGSESERGGFTGHPMCEFCRTPFYGDNELYTHMSTEHYTCHICQRLHPGQYEYYKNYDDLEIHFRQGHFLCEDEACLAKKFVVFQSEAEMKRHNTIEHGGKLSRSKRNAALQIPTSFRYRRSNDQDNRRGRRTFRRDSSDDLLSLALQESFETANVDDNNHDPLPSGQVASDQENLSNVDPLIESFEALATTDPESASRYLQALGHSRNSQLEQSSFPPLSTASSSSHPKPNQDKDIIHNNSMAAHLRRQRNNVTVLNSAGWPKSSRAPVLPSNNSSQAWPAINSNHAASSSSGQTKGVATINNGPSVSAYANAAQMHPKPRSTSSSGSGSSSRISHSASAPNLTDIAHTEPSVNEFPPVSAAHARKVPSSSQSSMNMEDVQTANKSLVEKIRAALDFDQDRYSIFKDISAQYRQGQIDTEMYLDCVQQFGLSHLLLELARLCPDPQKQKELVETYNASFHKDVFPVNGRAQDSIQIKDKSKGKKGKGKSIEVKDSSSKDKLADSIMSSVRELQSSYRPPDEDVEVLSKGEYRTSKGKLKISSDDQQGGTGRQKSQPSTGLSNQSTGDGGGGGGGSKQKKKTSKFHRVRLGDGSVAALLDLKNSNLGSDPDPDERVEDRNNGAGALPVRGVWRNGAQKLFS* 825
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19259595 19265250 + CsaV3_7G030450.1 Csa07g01956 537519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01956 824 CDD RING-HC_ZNF598 5 46 IPR041888 -
Csa07g01956 824 MobiDBLite consensus disorder prediction 660 684 - -
Csa07g01956 824 PANTHER ZINC FINGER PROTEIN 598 1 822 IPR044288 GO:0061630|GO:0072344
Csa07g01956 824 ProSiteProfiles Zinc finger RING-type profile. 5 46 IPR001841 -
Csa07g01956 824 Coils Coil 822 824 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 660 772 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 304 318 - -
Csa07g01956 824 SMART c2h2final6 108 145 IPR013087 -
Csa07g01956 824 SMART c2h2final6 197 220 IPR013087 -
Csa07g01956 824 SMART c2h2final6 221 251 IPR013087 -
Csa07g01956 824 SMART c2h2final6 252 281 IPR013087 -
Csa07g01956 824 MobiDBLite consensus disorder prediction 724 754 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 298 318 - -
Csa07g01956 824 PANTHER EBR1 1 822 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 784 824 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 442 561 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 442 494 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 390 420 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 336 357 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 699 723 - -
Csa07g01956 824 MobiDBLite consensus disorder prediction 501 533 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01956 K22381 - csv:101214376 1555.81