Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01962 ATGGGATGCTTTGGTTGCTGCGAAGAAGATGCTATCCAGAAGGCTGCTGATAATAGCAACACGTACCAAGTAAAAACATCAGCAGGAACTGATGAAAGCTATCACAAACGGCAAACTGCACCTAAAAGTCCTCCAATAGTGAAAATCCAGCCCATTGAAGTCCCTGCCATATCATTTGAGGAACTAAAGGAGGTAACCAAAAATTTTGATGCCGACTGTCTGATTGGAGAGGGTTCCTACGGTAGAGTATACTATGGGGTATTTACAAGTGGGCAGACTGTGGGAATTAAAAAGTTGGATGCCAGCAAACAGTCAGATGATGAATTCTTATCTCAGGTCTCCATGGTTTCAAGACTAAAGCACGATAATTTTCTAAACTTGATTGGGTACTGTGTTGGTGGCAATTCTCGAATTCTTGCATATGAGTATGCTTCAAATGGATCTCTTCACGACATTTTACATGGGAGGAAAGGAGTCAAAGGATCACAACCCGGCCCTGTTCTTTCCTGGGCACAAAGAGTAAAAATTGCTGTAGGTGCTGCAAAGGGGTTGGAGTATTTGCACGAAAAGGTCGATCCTCATATCACCCATCGTGACATAAAATCCAGCAACGTACTAATATTTGATGATGATTTGGCAAAAATTGCTGACTTTGATTTGTCAAACCAAGCCCCTGATATGGCTGCACGGCTTCACTCCACCCGTGTTCTTGGAACCTTTGGCTATCATGCTCCCGAATACGCAATGACTGGACAATTGAATTCCAAGAGTGATGTGTACAGCTTTGGCGTTGTCCTGCTTGAACTTTTGACAGGAAGAAAGCCAGTTGATCATACATTACCTCGAGGACAGCAAAGCCTCGTGACATGGGCCACGCCCAAACTTTGCGAAGACAAAGTTAAGCAGTGTGTTGATGCTAAACTTGGAAATGAGTACCCTCCTAAGTCAGTTGCTAAGTTTGCAGCAGTGGCTGCATTATGCGTCCAATACGAAGCAGATTTCAGACCAAACATGAGTATTGTAGTCAAAGCTCTTCAACCACTCTTAAATGCCCGTCCTGGTCCTTGA 1068 43.82 MGCFGCCEEDAIQKAADNSNTYQVKTSAGTDESYHKRQTAPKSPPIVKIQPIEVPAISFEELKEVTKNFDADCLIGEGSYGRVYYGVFTSGQTVGIKKLDASKQSDDEFLSQVSMVSRLKHDNFLNLIGYCVGGNSRILAYEYASNGSLHDILHGRKGVKGSQPGPVLSWAQRVKIAVGAAKGLEYLHEKVDPHITHRDIKSSNVLIFDDDLAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLCEDKVKQCVDAKLGNEYPPKSVAKFAAVAALCVQYEADFRPNMSIVVKALQPLLNARPGP* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19297443 19301501 + CsaV3_7G030510.1 Csa07g01962 537525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01962 355 Gene3D Phosphorylase Kinase; domain 1 28 143 - -
Csa07g01962 355 Gene3D Transferase(Phosphotransferase) domain 1 144 352 - -
Csa07g01962 355 CDD STKc_IRAK 75 348 - -
Csa07g01962 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Csa07g01962 355 Pfam Protein tyrosine and serine/threonine kinase 74 345 IPR001245 GO:0004672|GO:0006468
Csa07g01962 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
Csa07g01962 355 PIRSF ILK 9 352 - -
Csa07g01962 355 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01962 355 SUPERFAMILY Protein kinase-like (PK-like) 44 345 IPR011009 -
Csa07g01962 355 SMART serkin_6 69 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g01962 355 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g01962 Csa-Chr7:19297443 Csa04g00130 Csa-Chr4:737541 8.33E-91 dispersed
Csa01g03369 Csa-Chr1:30320644 Csa07g01962 Csa-Chr7:19297443 4.35E-07 transposed
Csa03g03558 Csa-Chr3:31833672 Csa07g01962 Csa-Chr7:19297443 3.19E-173 transposed
Csa04g00358 Csa-Chr4:2167590 Csa07g01962 Csa-Chr7:19297443 6.69E-45 transposed
Csa04g00359 Csa-Chr4:2171275 Csa07g01962 Csa-Chr7:19297443 4.70E-123 transposed
Csa06g00373 Csa-Chr6:3096514 Csa07g01962 Csa-Chr7:19297443 1.37E-177 transposed
Csa03g02847 Csa-Chr3:27248544 Csa07g01962 Csa-Chr7:19297443 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78504 PF07714 PK_Tyr_Ser-Thr 4.70E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01962 K13436 - csv:101215263 719.539