Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01986 ATGGCGGAATCCGAGCATCGCGCTAAGCGCCTTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCTAATGGATCTGGTAAAAGCTCTATTGTGTGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACGCACAACAAATCCGAGTGGCTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCACAGGACAGGGTTTGTGAATTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACGGAAAAGGCAGTTGGTGACCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATTGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCATGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGTTAAAGTATGACATGAAAAAGGCCGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGAAGCCAATTGAGAAACAAAAATTGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAACGATAATCACAAGAAAAGGGTGGAACTTCAGGAAACTGAAAATCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACCTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCGCACGAGCTAAAGAGGAACTTGAATCTGCTGAGTTTGAACTTCAGAATTTGCCTGCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAACATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTCGGATAGGTTAAAAGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCTAATCGGACTCATGCTGACTACTTAGAAGGCCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTCATGATCGCGACATTATGGTAAAAAACTTGGGCTCTTTTGGCGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATCTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAGTGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGAGAAGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAGAGGTTTCATTGTGCAATTGAAATTAAGAATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCTACAGCAACTTTCAGCTGCCAAGAAGTATGCAGAATCTATTGCTGCAATCACACCTGAACTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCTGCTATTCAAGATAATATCTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACATCATTGCACGAAAACTAGAGGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGAAACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGTTCGGTGTCAACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACACCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGCGAGGCCTGTACTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 3162 40.39 MAESEHRAKRLRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVEHVRQRDELLKKVESMKKKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKKPIEKQKLEKAKLDAKTKKYSTRINDNHKKRVELQETENRLGVQVQGKLKEMEDLRKQEESRQQRIARAKEELESAEFELQNLPAYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCSDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSHDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHISGSVEPVDRSRLLLCNLDAGEIDGLRSRKSELEESVSALEENCKSCQNELRLIEDEEAKLRKHREDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYLQQLSAAKKYAESIAAITPELEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINIIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACTILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC* 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19450572 19466838 - CsaV3_7G030750.1 Csa07g01986 537549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01986 1053 Gene3D - 848 1022 IPR027417 -
Csa07g01986 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Csa07g01986 1053 CDD ABC_SMC5_euk 926 1028 - -
Csa07g01986 1053 CDD ABC_SMC5_euk 23 180 - -
Csa07g01986 1053 Coils Coil 842 879 - -
Csa07g01986 1053 Coils Coil 747 774 - -
Csa07g01986 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Csa07g01986 1053 Gene3D - 584 713 - -
Csa07g01986 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Csa07g01986 1053 Coils Coil 329 359 - -
Csa07g01986 1053 Coils Coil 622 698 - -
Csa07g01986 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1005 IPR027417 -
Csa07g01986 1053 Coils Coil 209 229 - -
Csa07g01986 1053 Coils Coil 394 428 - -
Csa07g01986 1053 Coils Coil 252 279 - -
Csa07g01986 1053 Gene3D - 24 218 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01986 K22803 SMC5; structural maintenance of chromosomes protein 5 - csv:101210248 2049.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00402 Csa-Chr4:2449183 Csa07g01986 Csa-Chr7:19450572 1.51E-23 dispersed
Csa07g01591 Csa-Chr7:16413494 Csa07g01986 Csa-Chr7:19450572 6.05E-07 dispersed
Csa07g01986 Csa-Chr7:19450572 Csa07g01989 Csa-Chr7:19478191 1.71E-18 proximal
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g01986 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.4 0.0e+00 1385.5
Csa04g00402 . 10 1053 Structural Maintenance of Chromosomes family AT5G07660 63.7 0.0e+00 1258.4
Csa04g00402 . 2 1053 Structural Maintenance of Chromosomes family AT5G61460 66.3 0.0e+00 1329.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32