Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g01986 ATGGCGGAATCCGAGCATCGCGCTAAGCGCCTTAGAATTACGAGGGGGGAAGATGATTATATGCCTGGAAGTATAATTGAGATTGAGCTTCATAACTTTATGACCTTTAACCACCTGAAATGTAAACCAGGATCACGTCTAAACCTTGTAATTGGGCCTAATGGATCTGGTAAAAGCTCTATTGTGTGTGCTATTGCCCTTGGCCTTGGTGGTGAGCCTCAGCTCCTTGGAAGGGCAACCAGTGTTGGAGCATACGTGAAGCGTGGGGAGGAGTCTGGTTATGTTAGAATAACCTTGAGAGGGAATACTAAAGAGGAAAAGATTACAATTACACGTAAAATGGACACGCACAACAAATCCGAGTGGCTGTTCAATGGAAAAGTTGTGCCGAAAAAAGATGTAGCTGGAATTATTCAAAGGTTTAATATTCAAGTTAATAATTTAACTCAATTTTTACCACAGGACAGGGTTTGTGAATTTGCCAAATTAACTCCTGTGCAACTTTTAGAAGAGACGGAAAAGGCAGTTGGTGACCCTCAACTTCCTATCCTACATCGTGCACTTGTTGATAAAAGCCATGGCATAAAAAGTATTGAAAGAGCTGTTGAGAAAAATGGTGACACCCTAGATCAGTTGAAGGCATTAAATGTTGAGCAAGAGAAAGATGTTGAGCATGTTCGTCAAAGAGATGAACTTTTAAAAAAGGTTGAGTCCATGAAAAAGAAACTGCCATGGTTAAAGTATGACATGAAAAAGGCCGAATACTTGGAAGTTAAGGAAAAAGAAAAGGAGGCCAAAAAGAAGTTAGATGAAGCTGCTAACACTTTGAATGATCTAAAGAAGCCAATTGAGAAACAAAAATTGGAGAAGGCAAAGTTGGATGCTAAAACTAAAAAGTATAGCACTCGTATTAACGATAATCACAAGAAAAGGGTGGAACTTCAGGAAACTGAAAATCGTTTGGGGGTGCAAGTGCAAGGAAAATTGAAAGAAATGGAAGACCTGAGGAAACAAGAAGAATCTCGTCAACAGAGAATCGCACGAGCTAAAGAGGAACTTGAATCTGCTGAGTTTGAACTTCAGAATTTGCCTGCTTATGAACATCCCAAGGATGAGATTGAACGGTTGCGTGCTCAAATTTTGGAGTTGGAAGTTTCAGCAAGTCAGAAGAGACTTATGAAGTCAGAGATTGAGAAAAACATTTCCCAAAAAAGAAATACTTTGAGGCAATGCTCGGATAGGTTAAAAGATATGGAGAATACTAATACAAAACTACTACAGGCATTGAAAAATTCTGGAACAGAGAAGATTTTTGAAGCTTATCACTGGCTTCAAGAACATCGCCATGAGTTCAAGAAGGAGGTGTATGGTCCAGTGTTGCTAGAGGTTAATGTGTCTAATCGGACTCATGCTGACTACTTAGAAGGCCATATTCCATCCTATGTCTGGAAGTCCTTCATAACCCAAGATTCTCATGATCGCGACATTATGGTAAAAAACTTGGGCTCTTTTGGCGTTCCTGTCTTAAACTATGTGGGAGGTGAAAGGCGCACAAATCAGCATTTTGAGTTGTCTGAGGAGGTTCGTGCATTTGGCATATATTCTCGGCTAGACCAAATTTTTGATGCTCCTGCAGCTGTAAAGGAGGTTTTGACCATGCAGTTTGGTTTGGAACATTCATATATTGGTTCAAAGGTAACTGATCAAAAGGCAGACGAGGTCTCAAAATTGGGAATTTTAGATTTTTGGACTCCAGATAATCATTATCGATGGTCTCGCTCTAGATACGGTGGTCATATCTCCGGAAGTGTGGAACCAGTTGATCGCTCACGTCTTCTTTTGTGCAACTTGGATGCGGGAGAAATTGATGGGCTTCGCTCTAGGAAAAGTGAGCTAGAAGAATCTGTTTCTGCCTTAGAAGAAAATTGTAAATCATGTCAGAATGAGCTAAGATTGATAGAGGATGAAGAAGCTAAACTTCGCAAACATCGAGAAGACATTTTAAATACTGTGCAACATGAGAAGAGAAAACGACGTGAAATGGAAAATCGCATTGATCAAAGGAAAAAGAAATTAGAATCTATGGAGCGGGAAGATGACTTGGATACTGTTGTGGCCAAGCTTGTCGACCAAGCTGCAAATTTTAACATTCAGAGGTTTCATTGTGCAATTGAAATTAAGAATTTGCTTCTTGAAGCCGTTTCCTATAGACAGAGCTTGACTAAGAACCATATGTCTTCCATTGAAATTGAAGCAAAGATCAGAGAATTGGAGGTTAATCTAAAGCAGCATGAAAAGGTTGCTCTGCAAGCGTCAGTGCAGTTTGAGTACTGCAAGAAGGAAGTTGAGGACTATCTACAGCAACTTTCAGCTGCCAAGAAGTATGCAGAATCTATTGCTGCAATCACACCTGAACTTGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAATTGGAGGCTGCTATTCAAGATAATATCTCTCAAGCTAATTCCATTCTATTCTTAAACCATAACGTGCTTGAGGAATATGAACATCGTCAGCGTCAGATAAACATCATTGCACGAAAACTAGAGGCTGATAAACATGAACTAAGGAAGTGTATGGCTGAAGTTGATGAGCTGAAGGGAAATTGGCTCCCAACATTAAGAAAACTTGTTTCTCAGATAAATGAAACTTTTAGTCGCAATTTTCAAGAGATGGCTGTTGCTGGAGAAGTGTTATTGGATGAGCATGATATGGACTTTGATCAATTTGGAATACTTATTAAAGTGAAGTTCAGACAATCAGGTCAGCTTCAGGTTCTCAGTGCACATCATCAATCTGGAGGGGAACGTTCGGTGTCAACAATTCTGTATCTTGTTTCCCTTCAAGACCTTACCAACTGCCCATTTAGAGTAGTTGACGAGATAAACCAAGGAATGGATCCCATAAATGAACGGAAGATGTTCCAGCAATTGGTGAGAGCTGCCAGCCAAACCAATACACCACAGTGTTTCCTACTGACTCCAAAGTTACTTCCAGAACTGGAATATAGCGAGGCCTGTACTATACTGAATATAATGAATGGTCCTTGGATCGAGCAGCCCTCGAGAGCATGGAGCAATGGAGATAGCTGGGGAACGTTGATGAACTACGTAGGAGAAAGCCGATGTTGA 3162 40.39 MAESEHRAKRLRITRGEDDYMPGSIIEIELHNFMTFNHLKCKPGSRLNLVIGPNGSGKSSIVCAIALGLGGEPQLLGRATSVGAYVKRGEESGYVRITLRGNTKEEKITITRKMDTHNKSEWLFNGKVVPKKDVAGIIQRFNIQVNNLTQFLPQDRVCEFAKLTPVQLLEETEKAVGDPQLPILHRALVDKSHGIKSIERAVEKNGDTLDQLKALNVEQEKDVEHVRQRDELLKKVESMKKKLPWLKYDMKKAEYLEVKEKEKEAKKKLDEAANTLNDLKKPIEKQKLEKAKLDAKTKKYSTRINDNHKKRVELQETENRLGVQVQGKLKEMEDLRKQEESRQQRIARAKEELESAEFELQNLPAYEHPKDEIERLRAQILELEVSASQKRLMKSEIEKNISQKRNTLRQCSDRLKDMENTNTKLLQALKNSGTEKIFEAYHWLQEHRHEFKKEVYGPVLLEVNVSNRTHADYLEGHIPSYVWKSFITQDSHDRDIMVKNLGSFGVPVLNYVGGERRTNQHFELSEEVRAFGIYSRLDQIFDAPAAVKEVLTMQFGLEHSYIGSKVTDQKADEVSKLGILDFWTPDNHYRWSRSRYGGHISGSVEPVDRSRLLLCNLDAGEIDGLRSRKSELEESVSALEENCKSCQNELRLIEDEEAKLRKHREDILNTVQHEKRKRREMENRIDQRKKKLESMEREDDLDTVVAKLVDQAANFNIQRFHCAIEIKNLLLEAVSYRQSLTKNHMSSIEIEAKIRELEVNLKQHEKVALQASVQFEYCKKEVEDYLQQLSAAKKYAESIAAITPELEKEFLEMPTTIEELEAAIQDNISQANSILFLNHNVLEEYEHRQRQINIIARKLEADKHELRKCMAEVDELKGNWLPTLRKLVSQINETFSRNFQEMAVAGEVLLDEHDMDFDQFGILIKVKFRQSGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQTNTPQCFLLTPKLLPELEYSEACTILNIMNGPWIEQPSRAWSNGDSWGTLMNYVGESRC* 1054
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19450572 19466838 - CsaV3_7G030750.1 Csa07g01986 537549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g01986 1053 Gene3D - 848 1022 IPR027417 -
Csa07g01986 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 25 996 IPR027417 -
Csa07g01986 1053 CDD ABC_SMC5_euk 926 1028 - -
Csa07g01986 1053 CDD ABC_SMC5_euk 23 180 - -
Csa07g01986 1053 Coils Coil 842 879 - -
Csa07g01986 1053 Coils Coil 747 774 - -
Csa07g01986 1053 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 19 1049 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Csa07g01986 1053 Gene3D - 584 713 - -
Csa07g01986 1053 Pfam RecF/RecN/SMC N terminal domain 25 993 IPR003395 -
Csa07g01986 1053 Coils Coil 329 359 - -
Csa07g01986 1053 Coils Coil 622 698 - -
Csa07g01986 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 1005 IPR027417 -
Csa07g01986 1053 Coils Coil 209 229 - -
Csa07g01986 1053 Coils Coil 394 428 - -
Csa07g01986 1053 Coils Coil 252 279 - -
Csa07g01986 1053 Gene3D - 24 218 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00402 Csa-Chr4:2449183 Csa07g01986 Csa-Chr7:19450572 1.51E-23 dispersed
Csa07g01591 Csa-Chr7:16413494 Csa07g01986 Csa-Chr7:19450572 6.05E-07 dispersed
Csa07g01986 Csa-Chr7:19450572 Csa07g01989 Csa-Chr7:19478191 1.71E-18 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g01986 K22803 - csv:101210248 2049.63