Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02004 ATGGCGAAGACTAGAAATCATGAGCCATCGCGATCGTTAGCAAATGATACATGTACAATTCGGCTGACTGAAATTTTTGGGAAGGCGACTAGGTCTATTTTGGGCTTCTTTATCATGATGGGTCTTTGCAATGGTGTGCATTACCTTTTGAGGCCATTTTCTCAACCTCGCATTACCTCTGATACGATCGTAGGTTTGGTTGTTGGCAACTTCATAAGGAAGCAACTTGATATATCAACGATTAAGACGCTGCGTTATATTGTCGACTTTGGTATGGTATGCTATATGTTTGTGCTGGGATTGGAGGTGGATCCATACGTAATCTTCAAAGCACCTACACGCGATGCTAAGGTAGCTTATGCTGGAATGATTTCAACACTCATCTTAGCCTGTTCCATAATCCCATTTATTGGCATGATAAAGTCAAAAGAGATCAGTTTCATACTCTCCCTCTCAACTGTCCTCTCTAGCACAGCTTCTCCTGTGCTAACCCGTTTGATTACCAGTCTTAAAATAGGTAAGTCAGATATAGGCCGGCTCGTCATTGCTGCTGGCATGCATTCTGATTTTATATCCACCCTCATGATCTGTGTTGGTTATCTCTTTTGCAAATGCCAAGAGACACGCATCTCCTTTATAAAAGGTTTTCAGTTAGGCATTCTATTATTGATCCAGGCAGTACTGACGGCGAAGGTTTCACCAGTATTCATGAACTGGGTAAATAACGAAAACCCCGAGGGTAAACCTATGAAAGGTCCTCACCTGGTTCTTGCAGTTGCTTTCATGGCCTTCCTTTGCTGCTGCCCTACTGTGTTTGGTTACAATCCAATTCTCAGTGCATTCTTAGCTGGAACGTTTTTACCTCGAGAAGGTAGAGTATCAAGATGGGCAATTGGAAAAATTAATTACCTGCTTACTACCGTTTTCTATCCCATCTTCTTCTTTTGGATGGGGGTTGAATCCAAGCTGACTGACTTTGAACCTGGACAAATAATGACATGGGTCAGGTTAATTCTGCTTTTTGCTATTGCAACCTTAGGAAAAGTTGTTGGTACTGTCATTGCTGGGGCAATTTTGGGGTTTCATTGGCCTGAATCAGTAGCACTTGGGCTGCTGTTAACCATGAAGGGCCATTTTCATATATACTTAGCTATTGCTGCAAAAACAGCCGGAAAGATAACTACATCTACGAGTATAGTGATGGTAATTGTAATCTTCTTCACAATCGTGCATGCCCCAAAAGTTGTAGCACATATAATCCAAAGGGCAAGGAAACGTACGCCTACACATCGAATGGCTCTCCAATTGCTTGATCCGTCAAGCGAGCTTAAGATCTTGTTATGTATACATGGACCTCAGAACACTCCAGCAGCCATTAACATCATGGAGATTTCTCGGGGGACAGCTAACCCTGGGGTTGTTGTATATGTTACAGACATGATTGAACTTACAGATGAAATAGCATCCACATTAGTTCAGGGTGAAGGAGTTGACAGCGTGACTGTAACCCACACAGGAGTGACGCAAATGAGAGAACAAGTTACTTCTGCAGTTCAAAGCTATGTAGATGAAAATGGAGAAGGGATTACTCTTAGAAGAATGTTGGCTCTCTCAACATTCAATTCTATGGCTCAGGACATTTGCATTTTGGCAGAGGAATTGATGGGAGCTCTTATCATACTGCCATTCCACAAGAGCCAGCGTGGAGACGGATCATTGAGTGAGGGCCAAACAGCTTTCCGCTATGTAAACCGCAAGGTTCTCAGGCATGCCCCCTGCTCTGTGGGAATCCTAGTGGATCGAGGACTTGGATCAGTAGAGAAAATTTCAAGGTCCTATGTATCTCAAAATGTGGCAGTCATCTTCATTGGCGGTAAAGACGACCGAGAAGCATTAGCCTACGCTGGTCGAGTAGCAAGGCATCCCGGAGTTAAACTCTCAGTGATTAGATTCTTAGTGGACGCTGATGCAGTAAATGCTGCAAGAAGAGCGGGAACTTACAGGATAAGTGTGGCTGAGCAGGAAGAGGAAATGAGACAAGATGATGAATGCTTTGCCTATTTTTACGAACGACATGTGGCTGGTGGACATGTTGCTTATGTTGAAAAACATCTGGCCAGTTCCTCCGAGACGTATTCTACTTTGAAATCACTGGAAGGGCAATATGCCCTCATCATTGTAGGTCGAGGTGGGAAGGTTAACACGGTGTTAACTTTCGGGATGAATGACTGGCAACAATGTCCAGAACTGGGTCCTATAGGCGATATTCTCTCCGGGTCTGAATTCTCTGTTAGGACCTCAGTTTTGATCATCCATCAACACAATCTAAAAGGAGAGCTAGATGGGCTTGATGATGACTTTTCAATAATGTAG 2373 43.49 MAKTRNHEPSRSLANDTCTIRLTEIFGKATRSILGFFIMMGLCNGVHYLLRPFSQPRITSDTIVGLVVGNFIRKQLDISTIKTLRYIVDFGMVCYMFVLGLEVDPYVIFKAPTRDAKVAYAGMISTLILACSIIPFIGMIKSKEISFILSLSTVLSSTASPVLTRLITSLKIGKSDIGRLVIAAGMHSDFISTLMICVGYLFCKCQETRISFIKGFQLGILLLIQAVLTAKVSPVFMNWVNNENPEGKPMKGPHLVLAVAFMAFLCCCPTVFGYNPILSAFLAGTFLPREGRVSRWAIGKINYLLTTVFYPIFFFWMGVESKLTDFEPGQIMTWVRLILLFAIATLGKVVGTVIAGAILGFHWPESVALGLLLTMKGHFHIYLAIAAKTAGKITTSTSIVMVIVIFFTIVHAPKVVAHIIQRARKRTPTHRMALQLLDPSSELKILLCIHGPQNTPAAINIMEISRGTANPGVVVYVTDMIELTDEIASTLVQGEGVDSVTVTHTGVTQMREQVTSAVQSYVDENGEGITLRRMLALSTFNSMAQDICILAEELMGALIILPFHKSQRGDGSLSEGQTAFRYVNRKVLRHAPCSVGILVDRGLGSVEKISRSYVSQNVAVIFIGGKDDREALAYAGRVARHPGVKLSVIRFLVDADAVNAARRAGTYRISVAEQEEEMRQDDECFAYFYERHVAGGHVAYVEKHLASSSETYSTLKSLEGQYALIIVGRGGKVNTVLTFGMNDWQQCPELGPIGDILSGSEFSVRTSVLIIHQHNLKGELDGLDDDFSIM* 791
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19586808 19590701 + CsaV3_7G030930.1 Csa07g02004 537567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02004 790 Gene3D - 444 743 - -
Csa07g02004 790 PANTHER CATION/H + ANTIPORTER 20 787 - -
Csa07g02004 790 PANTHER CATION/H(+) ANTIPORTER 28 20 787 - -
Csa07g02004 790 Coils Coil 780 790 - -
Csa07g02004 790 Gene3D - 29 429 IPR038770 -
Csa07g02004 790 Pfam Sodium/hydrogen exchanger family 43 418 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02004 Csa-Chr7:19586808 Csa02g01615 Csa-Chr2:15210953 2.70E-116 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02004 - - csv:101211645 1511.51