Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02016 ATGGAACATGCAGAATCTTCGGCAAAGGTTATAAAGAACATGGGCCCCAATGCCTGTCAAATATGTGGAGACCATGTCGGGAAGACCGTCGAGGGTGAGCCATTTGTTGCTTGTGATGTTTGTACATTTCCTGTGTGCAGACCATGCTACGAGTACGAGAGAAAAGATGGGAATCAGTCTTGTCCTCAATGCAAAAGCAGATACAAGAGGCACAAAGGAAGTCCTGCTGTTCTCGGTGATGATGAGGCTGCTGAGCTTGATGATGATGATGATGATGCAATTGATTTAAATTACATTTCTGAAAGTCAAAAACAGAAGCAGAAGATTGCTGAACGAATGATGAGCTGGCAGATGTCATATGGACATGCACAAGATCTCCCCCCACCGAACTACGATAAAGAAGTTTCTTTAAATCACATACCCTTGCTCACCAATGGGCAGGAGGTTTTTGGAGAACTGTCAGCTGCATCACCTGAGCATCATTTGATGGCATCTCCTGGACATCCTCGTGGGAAGCCAATATATTCTCTTCCTTATGCAGCTGACATTAACCAATCGCCTAATGTGCAAGGTGTGGACCCTACAAAAGAGTATAGTTCATCGGGGCTAGGCAATGTAGCTTGGAAAGAGAGAGTTGATGGCTGGAAGATGAAACAAGAGAAGAATGCTGGACCAATGAGCATAGCCCATGCTGCATCTGAAAGGGGAGGTGGAGATATTGATGCCTGCACAGATGTGCTTGTTGATGACTCCTTACTAAATGATGAAGCACGCCAGCCTCTCTCGCGAAAGGTTTCTGTTCCATCATCTAGGATAAACCCTTACAGGATGGTGATTGTTCTGCGGCTTGTAATTATTTGTTTTTTCTTGCACTACCGAATCACGAATCCAGTACGCAATGCATATGCTTTATGGCTGGTATCTGTTATATGTGAGATTTGGTTTGCAATATCCTGGATATTAGATCAGTTCCCGAAGTGGCTTCCTGTTAACCGTGAGACATATTTAGACCGGCTTGCATTAAGATATGATAGGGAAGGAGAACCATCACAGCTTGCTGCTGTTGACATTTTTGTGAGTACTGTCGACCCACTGAAGGAGCCTCCACTTGTCACAGCCAACACCGTACTGTCTATTCTTGCTGTTGACTACCCGGTTGACAAGGTCTCGTGCTATGTTTCTGACGATGGAGCTGCCATGTTGACATTTGAAGCATTATCCGAAACATCAGAGTTTGCAAGGTCATGGGTGCCTTTCTGCAAGAAATACAGCATCGAGCCTCGGGCTCCAGAGTGGTACTTTGCTCAGAAAATTGATTACTTGAAGGATAAAGTCGATCCATCATTTGTCAAAGATCGAAGAGCAATGAAGAGAGAATATGAGGAATTTAAGGTCCGCGTCAACGGATTGGTATCAAAGGCACAGAAAGTTCCCGAAGAAGGATGGGTCATGCAAGATGGAACTCCATGGCCCGGAAATAATACTAGAGACCATCCAGGAATGATCCAGGTTTTCCTAGGGCAAAACGGTGGACTGGATACCGATGGTAACGAGTTGCCTCGTTTAGTCTATGTATCTCGTGAAAAACGTCCAGGGTTCCAACATCATAAGAAAGCTGGTGCAATGAATGCTCTTGTTCGAGTATCTGCTGTTCTTACCAATGGCCCATTCTTGTTGAATCTTGACTGTGATCACTACATAAACAACAGCAAGGCATTGAGGGAAGCAATGTGTTTTATGATGGATCCAAACCTTGGCAAATACGTCTGTTATGTTCAGTTTCCTCAAAGATTTGACGGTATTGATAGAAATGATCGATATGCCAACCGAAATACCGTGTTCTTTGATATAAATTTGAGAGGTTTAGATGGCCTACAAGGTCCAGTTTATGTGGGTACTGGATGTGTCTTCAACAGAACTGCACTGTATGGTTACGAACCTCCGCTCAAACCAAAGAATCGGAAAACAGGATTTCTGTCTTCGCTCTGTGGCGGATCTCGAAAGAAGAAAGCGAAATCAAGTAAAAAGAGCCCAGACAAGAAGAAATCAAGCAAGCATATTGATCCAACAGTGCCAATTTTCAATCTCGACGACATTGAAGAAGTGGTTGAAGGTGCTGGATTTGATGATGAGAAGTCCTTGCTAATGTCACAAATGACCCTGGAACAAAGGTTTGGCCAGTCTTCTGTTTTTGTTGCCTCAACCCTTATGGAAAACGGTGGTGTTCCTCAATCTGCAACGCCCGAGTCTCTTCTGAAGGAGGCTATTCATGTAATTAGCTGTGGATATGAAGATAAAACGGACTGGGGATCTGAGATTGGATGGATTTATGGCTCTGTCACTGAAGATATTCTTACAGGATTCAAGATGCATGCTCGTGGTTGGCGGTCGATTTATTGTATGCCACAACGTCCTGCCTTTAAAGGGTCTGCACCTATTAATCTTTCAGATCGATTAAACCAAGTGCTTCGATGGGCCCTTGGTTCCGTGGAGATTCTTCTAAGTAGGCATTGCCCTATCTGGTATGGCTATGGTGGAAGGCTCAAATGGCTCGAACGGTTTGCATATGTGAACACTACAATATATCCGATCACCTCGATTCCTCTTCTCATGTATTGTACCTTACCAGCCGTGTGTCTACTGACGAACAAGTTCATTATTCCCCAGATAAGTAACATTGCAAGTATATGGTTTTTAGCCCTCTTCCTCTCCATTTTTGCAACGGGCATTCTCGAGATGAGATGGAGTGGAGTTGGGATAGACGAATGGTGGAGAAACGAACAATTTTGGGTCATTGGAGGTGTTTCAGCTCACCTGTTTGCTGTTTTCCAAGGTCTGCTTAAGGTTCTTGCCGGTATCGACACCAACTTTACGGTGACATCCAAGGCGTCTGACGAAGATGGGGATTATGCTGAGCTTTACATGTTCAAATGGACGACACTTCTCATCCCACCAACTACACTCCTCATCGTAAACTTGGTCGGGGTCGTAGCGGGGATATCTTACGCAATCAACAGCGGATACCAATCATGGGGACCGTTGTTTGGCAAGCTATTTTTCGCTTTTTGGGTGATCATTCATCTCTATCCATTCTTGAAAGGTTTGATGGGTCGTCAAAACAGAACACCCACCATCGTCGTCGTGTGGTCGATTCTACTTGCTTCCATCTTCTCCCTGTTATGGGTGAGGATCGATCCGTTCACCACAACAGTCATAGGGCCCGACGTAGAGGAGTGTGGAATCAACTGCTAG 3252 44.71 MEHAESSAKVIKNMGPNACQICGDHVGKTVEGEPFVACDVCTFPVCRPCYEYERKDGNQSCPQCKSRYKRHKGSPAVLGDDEAAELDDDDDDAIDLNYISESQKQKQKIAERMMSWQMSYGHAQDLPPPNYDKEVSLNHIPLLTNGQEVFGELSAASPEHHLMASPGHPRGKPIYSLPYAADINQSPNVQGVDPTKEYSSSGLGNVAWKERVDGWKMKQEKNAGPMSIAHAASERGGGDIDACTDVLVDDSLLNDEARQPLSRKVSVPSSRINPYRMVIVLRLVIICFFLHYRITNPVRNAYALWLVSVICEIWFAISWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARSWVPFCKKYSIEPRAPEWYFAQKIDYLKDKVDPSFVKDRRAMKREYEEFKVRVNGLVSKAQKVPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGQNGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKYVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGLQGPVYVGTGCVFNRTALYGYEPPLKPKNRKTGFLSSLCGGSRKKKAKSSKKSPDKKKSSKHIDPTVPIFNLDDIEEVVEGAGFDDEKSLLMSQMTLEQRFGQSSVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPQRPAFKGSAPINLSDRLNQVLRWALGSVEILLSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLMYCTLPAVCLLTNKFIIPQISNIASIWFLALFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDYAELYMFKWTTLLIPPTTLLIVNLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIIHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRIDPFTTTVIGPDVEECGINC* 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19667913 19674665 + CsaV3_7G031050.1 Csa07g02016 537579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02016 1083 Pfam Cellulose synthase 355 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa07g02016 1083 SUPERFAMILY RING/U-box 5 89 - -
Csa07g02016 1083 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 497 646 IPR029044 -
Csa07g02016 1083 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 93 IPR013083 -
Csa07g02016 1083 Pfam Zinc-binding RING-finger 10 83 IPR027934 -
Csa07g02016 1083 MobiDBLite consensus disorder prediction 656 688 - -
Csa07g02016 1083 CDD mRING-HC-C4C4_CesA_plant 19 67 - -
Csa07g02016 1083 PANTHER CELLULOSE SYNTHASE 7 1083 - -
Csa07g02016 1083 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 1083 - -
Csa07g02016 1083 SUPERFAMILY Nucleotide-diphospho-sugar transferases 369 905 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g01082 Csa-Chr4:8832210 Csa07g02016 Csa-Chr7:19667913 0 dispersed
Csa06g00744 Csa-Chr6:6053307 Csa07g02016 Csa-Chr7:19667913 0 dispersed
Csa06g02816 Csa-Chr6:24583973 Csa07g02016 Csa-Chr7:19667913 0 dispersed
Csa07g02016 Csa-Chr7:19667913 Csa02g02799 Csa-Chr2:24381045 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02016 K10999 - csv:101206590 2179.06