Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02019 ATGGCTATGGCTGGGCGTATGAGATCGATCATTCCTCAATTCAATCAGCTTCTGAAATCGGAGTCACAGGCTCAGAGATCTGCTCTTACAAGAGCCCTACTTTGCCCCACGACTGCCAACTCCGAGATCTCGAGGAACTATGCAACTTCTTCCAAGAAAAGCGAGGCAAAAGTTAAAGTTCCTCTGGTTTTGTTTGGGGGGACTGGAAACTATGCCTCTGCTTTGTACCTTGCCGCAGTAAAAGCTAATTCCTTGGATAAGGCTGAGAAAGAGCTTGTAGACTTTGCCGAGGCTTTAAAGAGAAGTGCCACCTTCTCTCAGTTCATTAGTGATCCCACAGTGCATAAAGATACCAAGGTCAAGGTTATTAGCGATGTTTGTGCTGATGCTAAGTTTTCAGAAATTATGAAGAACTTTTTGGCTGTATTGGCTGAGAATGGAAGGCTGAAATACGTAGACGGCATTGCAAAGAAGTTTCAAGAGTTGACAATGGCTCATAGAGGAGAGGTGAAAGCCATTGTGTCTACTGTTATTCCCCTTCCTGCTGAAGAAGAGAAAGAACTGAAGGAGACTCTACAGTATATTATTGGAGAGGGGAAAAAGGTCAAGCTTGAACAGAAGATTGATCCAAGTATTCTTGGCGGAATAGTAGTAGAATTTGGGGAGAAAGTGTTCGACATGTCGATCAAGACCAGAGCAAAACAGATGGAGCGGTTCTTGCGAGAACCTGTGAACTTCAACAGCCTCTGA 750 44.27 MAMAGRMRSIIPQFNQLLKSESQAQRSALTRALLCPTTANSEISRNYATSSKKSEAKVKVPLVLFGGTGNYASALYLAAVKANSLDKAEKELVDFAEALKRSATFSQFISDPTVHKDTKVKVISDVCADAKFSEIMKNFLAVLAENGRLKYVDGIAKKFQELTMAHRGEVKAIVSTVIPLPAEEEKELKETLQYIIGEGKKVKLEQKIDPSILGGIVVEFGEKVFDMSIKTRAKQMERFLREPVNFNSL* 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19694106 19697728 - CsaV3_7G031080.1 Csa07g02019 537582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02019 249 PRINTS ATP synthase delta subunit signature 67 86 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 PRINTS ATP synthase delta subunit signature 137 148 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 PRINTS ATP synthase delta subunit signature 148 162 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 PRINTS ATP synthase delta subunit signature 200 215 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 PRINTS ATP synthase delta subunit signature 215 233 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 68 169 IPR026015 -
Csa07g02019 249 PANTHER ATP SYNTHASE SUBUNIT O, MITOCHONDRIAL 31 242 - -
Csa07g02019 249 Hamap ATP synthase subunit delta [atpD]. 63 242 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 Gene3D - 68 160 IPR026015 -
Csa07g02019 249 Pfam ATP synthase delta (OSCP) subunit 69 238 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 202 221 IPR020781 GO:0015986|GO:0016020|GO:0046933
Csa07g02019 249 PANTHER ATP SYNTHASE DELTA CHAIN 31 242 IPR000711 GO:0015986|GO:0046933
Csa07g02019 249 TIGRFAM ATP_synt_delta: ATP synthase F1, delta subunit 70 239 IPR000711 GO:0015986|GO:0046933
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02913 Csa-Chr3:27809654 Csa07g02019 Csa-Chr7:19694106 1.41E-27 transposed
Csa06g00274 Csa-Chr6:1950311 Csa07g02019 Csa-Chr7:19694106 2.71E-12 transposed
Csa03g02912 Csa-Chr3:27808023 Csa07g02019 Csa-Chr7:19694106 1.13E-46 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02019 K02137 - csv:101206351 467.233