Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02025 ATGACGGACCCAAATTACTCCTCCAATTCCTTCAATTTCATCCATCTTCCTCCTTCCAATTTCCTCCTTTCCCAATGCCGTCGCCCTACTCCTCCTCCGCCACCGTCATCTCCGCCGCAAGCCCTCCCTCTCCTCAACACCCTCTCGCCGGAAACCGCCGATCATCCCTCCTCCTCCACCACCACTCGTAGTTACGATGACGAATCTGCCGTTCTTGCTCTTGACATCAGCCTCTCTTGCCCTAGCTCCGATCTAGACTCCTTCTCGCCAGACCCCGGCACCGGGAAAATAATCGACGGCGACGTTTCCGACCACCCTTTGCCGATCTCCGGTAAGGGTCAGTACTGGATTCCGACCCCATCGCAGATCCTCATCGGTCCTACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGACACGGTTCACAATACAGAAAAGGACCAGAATCACTCAAAGGCACACAACCAACCGCAATGCTAAGGCTACCATGCTACTGTTGCGCAGTTGGTTGCAAACACAACATAGACAACCCTCGTTCACGCCCACTCAAAGATTTCCGAACCCTCCAGACACATTACAAGCGCAAGCACGGCATCAAGCCTTTCACTTGTAGAAAATGCACCAAAGCCTTTGCTGTTAAGGGCGATTGGCGAACCCACGAGAAGAATTGTGGCAAGATTTGGTATTGCTTTTGTGGCTCTGATTTTAAACATAAACGCTCCCTTAAAGACCACATCAAAGCCTTTGGTCGCGGCCATGGTGCCCTTGGCCTTGATTACTTTGACGATGATAATGAACCCTCTCCTGAACTCGATGAAGATCATCTCTTTGTTCGCCTTCGTTAA 882 50.45 MTDPNYSSNSFNFIHLPPSNFLLSQCRRPTPPPPPSSPPQALPLLNTLSPETADHPSSSTTTRSYDDESAVLALDISLSCPSSDLDSFSPDPGTGKIIDGDVSDHPLPISGKGQYWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCAVGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCTKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFDDDNEPSPELDEDHLFVRLR* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19726107 19729468 + CsaV3_7G031140.1 Csa07g02025 537588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02025 293 Pfam Zinc finger, C2H2 type 130 149 IPR013087 -
Csa07g02025 293 SMART c2h2final6 214 234 IPR013087 -
Csa07g02025 293 SMART c2h2final6 130 152 IPR013087 -
Csa07g02025 293 SMART c2h2final6 177 209 IPR013087 -
Csa07g02025 293 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Csa07g02025 293 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Csa07g02025 293 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 19 286 - -
Csa07g02025 293 MobiDBLite consensus disorder prediction 23 66 - -
Csa07g02025 293 Gene3D Classic Zinc Finger 129 152 - -
Csa07g02025 293 PANTHER ZINC FINGER PROTEIN WIP2 19 286 IPR043584 GO:0003700|GO:0010468
Csa07g02025 293 MobiDBLite consensus disorder prediction 27 41 - -
Csa07g02025 293 SUPERFAMILY beta-beta-alpha zinc fingers 197 234 IPR036236 -
Csa07g02025 293 SUPERFAMILY beta-beta-alpha zinc fingers 123 152 IPR036236 -
Csa07g02025 293 MobiDBLite consensus disorder prediction 42 66 - -
Csa07g02025 293 Gene3D Classic Zinc Finger 192 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02111 Csa-Chr4:21785444 Csa07g02025 Csa-Chr7:19726107 1.23E-112 dispersed
Csa05g01484 Csa-Chr5:17144798 Csa07g02025 Csa-Chr7:19726107 1.74E-96 dispersed
Csa07g02025 Csa-Chr7:19726107 Csa03g04077 Csa-Chr3:35706524 1.46E-20 dispersed
Csa07g01329 Csa-Chr7:13185682 Csa07g02025 Csa-Chr7:19726107 2.25E-26 transposed
Csa03g03608 Csa-Chr3:32155979 Csa07g02025 Csa-Chr7:19726107 4.32E-108 wgd
Csa04g01407 Csa-Chr4:14099785 Csa07g02025 Csa-Chr7:19726107 5.74E-112 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32362 PF00096 zf-C2H2 0.0015 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02025 - - csv:101209911 600.512