Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02054 ATGGAGCTTGGCCTCAGCTTGGGCGACGCCCCCAAGCCCTTTCGCTTTGTCGAGAAGCAATCTCAAGTCCCCTCCCCCCAGCGCCGACTTTCCCGCAAAGATTTGGGCTTCTGTGTCGACTTATCGATTGGCCGTTCCGTCGCCGGAGATAAAGAAGACGACGAAGACAAACCTAATCAAGGAGAAGATGAATCCGACGGTAATGAAGATCCACCGACTCAACTCGATCTTCTCCCTCATAATCCCGTTCCTCGAAACCTAACTAACCCGTACCAAGGATTTCCATGGCCGTCGTCCGAAAACGATGAAGGCGAAGATCGAACCGCATCGCCGAATAGCGCAGCGTCCTCGTTTCAAATGGAATTTGGACTGTACGGCAGCGGAGGTAACATTTCTTCCCGGAGAGATCAAATGGAAAATGGCGTAATGAACGAAGTAGGTGAATCTGAAAGAGCTTCTTCAAGAGCTAGTGATGAAGACGAAAATGGTTGTACAAGGAAGAAACTCAGACTCTCTAAAGAACAATCCGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACATTGAACCCTAAACAGAAACAGGCACTGGCTAAGCAACTGAATCTCCGTCCTCGCCAAGTGGAAGTTTGGTTTCAAAATAGAAGAGCAAGGACGAAATTAAAGCAAACGGAGGTAGATTGTGAGTATTTGAAAAGATGTTGTGAGACATTAACAGAAGAGAATCGACGGCTTCAAAAGGAGCTTCAAGAATTAAGAGCTTTGAAAACCACAAATTCACTCTACATGCAATTACCAGCTACAACACTAACCATGTGTCCGTCTTGTGAAAGAGTAACCTCATCTTCCGCCGCTTCCACCGTCGCTGCGACGGAGGGAGTTACAAAACGATCTGGGTTAGCCATTGGTGGTGGGCGACCAGGTTCTTCATCTTTCCCATTTTCTGCTAAAACACAGTCCCACCAGTCAACAGCTTCATGA 981 47.09 MELGLSLGDAPKPFRFVEKQSQVPSPQRRLSRKDLGFCVDLSIGRSVAGDKEDDEDKPNQGEDESDGNEDPPTQLDLLPHNPVPRNLTNPYQGFPWPSSENDEGEDRTASPNSAASSFQMEFGLYGSGGNISSRRDQMENGVMNEVGESERASSRASDEDENGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTTNSLYMQLPATTLTMCPSCERVTSSSAASTVAATEGVTKRSGLAIGGGRPGSSSFPFSAKTQSHQSTAS* 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19866731 19869254 - CsaV3_7G031430.1 Csa07g02054 537617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02054 326 ProSiteProfiles 'Homeobox' domain profile. 162 222 IPR001356 GO:0003677
Csa07g02054 326 CDD homeodomain 166 223 IPR001356 GO:0003677
Csa07g02054 326 SUPERFAMILY Homeodomain-like 159 223 IPR009057 -
Csa07g02054 326 MobiDBLite consensus disorder prediction 311 326 - -
Csa07g02054 326 Pfam Homeobox associated leucine zipper 222 256 IPR003106 GO:0006355|GO:0043565
Csa07g02054 326 Pfam Homeodomain 166 220 IPR001356 GO:0003677
Csa07g02054 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 297 - -
Csa07g02054 326 PANTHER - 1 297 - -
Csa07g02054 326 MobiDBLite consensus disorder prediction 56 70 - -
Csa07g02054 326 Coils Coil 228 258 - -
Csa07g02054 326 MobiDBLite consensus disorder prediction 145 165 - -
Csa07g02054 326 MobiDBLite consensus disorder prediction 151 165 - -
Csa07g02054 326 SMART HOX_1 164 226 IPR001356 GO:0003677
Csa07g02054 326 MobiDBLite consensus disorder prediction 295 326 - -
Csa07g02054 326 Gene3D - 170 220 - -
Csa07g02054 326 SMART halz 222 265 IPR003106 GO:0006355|GO:0043565
Csa07g02054 326 MobiDBLite consensus disorder prediction 1 113 - -
Csa07g02054 326 ProSitePatterns 'Homeobox' domain signature. 197 220 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02201 Csa-Chr1:19087128 Csa07g02054 Csa-Chr7:19866731 1.76E-55 dispersed
Csa03g02434 Csa-Chr3:22508106 Csa07g02054 Csa-Chr7:19866731 3.75E-65 dispersed
Csa04g02512 Csa-Chr4:24953048 Csa07g02054 Csa-Chr7:19866731 3.62E-56 dispersed
Csa05g02044 Csa-Chr5:23758676 Csa07g02054 Csa-Chr7:19866731 3.13E-44 dispersed
Csa06g03058 Csa-Chr6:26295272 Csa07g02054 Csa-Chr7:19866731 2.76E-75 dispersed
Csa03g00756 Csa-Chr3:6687287 Csa07g02054 Csa-Chr7:19866731 5.42E-70 transposed
Csa03g02942 Csa-Chr3:28028638 Csa07g02054 Csa-Chr7:19866731 2.73E-57 wgd
Csa03g03564 Csa-Chr3:31859666 Csa07g02054 Csa-Chr7:19866731 8.89E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32366 PF00046 Homeodomain 5.50E-16 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02054 K09338 - csv:101221600 630.557