Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02070 ATGGGGACTCCGGTGAATATCATCGTCGGATCACATGTTTGGGTTGAGGATTCCGAGGATGCTTGGATTGAAGGTCAAGTTACAGAAATTAAGGGCAAAAATGCTACTATACTCACTACCAATGCAAAAAATATTGTTGCAGAAATTTCGAGTATATATCCGAAAGATACGGAGGCGCCGCCGGCGGGAGTTGACGACATGACGAAATTGGCGTATCTTCATGAACCGGGAGTTCTGCATAACCTAGCTTGTCGATTTTCTCTCAATGAGATATACACATACACCGGGAATATTCTAATTGCGGTGAATCCTTTCCGGAGACTGCCCCATTTGTATGATATTCACATGATGGAACAATATAAAGGAGCTACTTTTGGCGAGCTTAGTCCGCATCTTTTCGCTGTTGCAGACGCTTGTTATAGAGCGATGATTAACGAGCAAGGGAGCCAGTCTATATTAGTGAGTGGAGAGAGTGGTGCTGGTAAAACTGAGACAACAAAGATGCTCATGAGATATCTTGCATTCATGGGAGGAAGGTCAGATACTGAAGGAAGAACAGTTGAACAACAGGTTTTGGAGTCCAACCCTGTACTGGAAGCATTTGGAAATGCCAAAACCGTCAAAAACAACAATTCAAGTCGTTTTGGTAAATTTGTAGAAATACAATTTGATAAGAATTGGAAGATCTCTGGTGCTGCCATTCGTACATACCTTCTCGAGCGGTCACGTGTTTGCCAAGTCTCAGACCCTGAGAGAAACTACCATTGTTTTTACATGCTCTGTGCAGCACCACCAGAAGATGTCAAGAAATTCAAGGTAGGAGACCCAAGGACATTTCATTATCTTAATCAAACGAATTGTTATGAAGTGGCGAATGTTGATGATTCAAGAGAGTACCTAGAGACGAGAAATGCCATGGATGTTGTCGGAATCAACCAGGATGAACAGGATGCAATATTTCGTGTTGTAGCTGCTATACTGCATCTTGGAAACGTTGAATTCATGAAAGGGAAGGAATTTGACTCCTCCAAAGTGAAAGACGAGAAGTCAAATTACCATCTTCAAACAGCAGCAGAGCTACTCATGTGTGATGTAAAGTCACTGGAACATTCGCTCTGCCAGCGTGTCATAGTGACCCCAGATGGAAACATTACGAAGCCTTTGGACCCAGATTCAGCAGCCTTGAGTCGTGATGCATTGGCAAAAACTGTGTACTCTAGACTGTTTGATTGGATTGTGGACAAAATTAATAGTTCAATTGGCCAAGATCCTAATGCAGCCAGCTTAATTGGTGTTCTTGATATTTATGGTTTTGAAAGCTTCAAGGTCAACAGTTTTGAGCAGCTCTGTATCAACTTGACCAATGAGAAGTTGCAGCAACATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAGGAGTATACGAAAGAAGAAATAAACTGGAGCTATGTTGAGTTTGTTGATAATCAGGATGTGCTTGATCTTATTGAGAAGAAGCCTGGAGGTATAATCGCCCTGCTTGATGAAGCCTGTATGTTTCCGAAGTCAACACATGAAACATTTGCTCAAAAGATGTATCAGACGTACAAAGGACATAAGCGGTTCAGCAAGCCAAAACTTGCTCGAACAGACTTCACAATAAACCATTATGCTGGAGATGTTACGTACCAAGCAGATCAATTTCTAGATAAAAACAAGGACTATGTAGTTGCAGAACATCAGGCTCTTCTAAATGCCTCGCAATGTTTTTTTGTTGCTAATCTTTTTCCTCCACTTCCCGAGGAGACTTCAAAGCAATCGAAGTTTTCTTCTATTGGTACGCGGTTCAAGCAACAACTACAAGCTCTCATGGAAACATTGAATACTACCGAACCACATTATATTAGATGTGTAAAACCCAACACAGTTCTGAAACCCGGTATCTTTGAGAACTACAACGTGTTGAACCAATTGAGGTGTGGGGGAGTGCTCGAGGCAATTAGAATAAGCTGTGCAGGATACCCAACAAAAAGAACATTTGATGAGTTCCTTGATCGTTTTGGAATGCTTGCTCCAGATATTTCGGACGGGTCTGACGAAAAATCAGCATGCATTGCAATATGTGACAGAATGGGCTTAAAGGGTTATCAGATTGGAAAAACAAAAGTGTTCCTCAGAGCTGGACAAATGGCTGAGTTGGATGCACGACGAACTGAAATTTTGGCTAATGCTGTCAGACTCATCCAGCGGCAAATCCGAACCTATCTAACTAGAAAAGAGTTCATTGCGCTGAGGAGAGCTACAATTCATATGCAGAAACTTTGGAGAGGGCAACTTGCTCGTAAGCTGTATGAGCAAATGAGGAGAGAAGCAGCTTCAATCCGTATACAGAAGCATGCACGTTCTCATGCAGATAGAAAATCTTACAAAAGATTACTTGCATCAGCTATAGTTATTCAAACTGGTATGCGTGCAATGGCAGCTAGAAATGAGTACAGGCACCGAAGAAGAACGAAGGCAGCTATCATTGTTCAGACTGAATGGCGAAGGGCATCGGCTATTTCAGCTTACAAACAGCAGCAGAAGGCAACTCTTGCCCTTCAATGCCTCTGGCGATCTAAAGTTGCAAGGAAGGAGCTTAGAAAATTAAAGATGGCTGCAAGAGAAACAGGAGCACTCAAGGAGGCCAAGGACAAATTGGAGAAGCGTGTTGAGGAGCTAACATGGCGCCTAGACTTTGAGAAGCACTTGAGAATGGATGTTGAAGAAGCTAAGGGACAAGAGGTCGCAAAGTTACAAAATGCTTTGGAAGAAATGCAAGGGCAGCTGGATGAAGCCAATGCTGCAATTATACGTGAGAGAGAAGCAGCAAAATTGGCCATAGAACAAGCTCCACCAGTCATTAAGGAAGTACCTGTGGTAGACGAGACAAAGCTAGAAATACTGAAAAATCATAATGAAGAACTTGAGGGTGTGGTTGGAGAGCTAAAGAAGAAAGTTGAGGAGTTCGAAGAAAAGTATGCTGAAGTGGAAAGGGAAAGTAAAGCTAGACTCAAGGAGGCAGAAGAGGCACAATTGAAATCAATGCAACTTCGAGAGACTATTGAGAGATTGGAATCAAATTTATCTAGCCTTGAGTCGGAGAACCAGGTTCTGCGCCAGCAGGCTTTGGTTGCAGCAGACAATGAGTCCCTCTCAGAAGAACTGGAAACCCTCAAGAGTAAGATTGGAAGTCTAGAGGCAGAGAATGAAGTTCTCCGCAATCGGACAGTGGCTGTTGAACATATACCTGTTCCCGCTGCAGCCCTTACAGAAAGCAAGACTTTAGATAATGGGCATCTAATTGAAGAAGAGATTAAATCAACTAAGGAACCATCTACTGTTCCAATTAAATCAACAAAGGAACAATCTACTGTTCCCATCCTAGCTAAACAAGGCTCGCTTACAGAAAAGCAACAGGAAAATCATGATGTCCTGATCAAGTGCTTAGCAGAAGACAAACGTTTTGACAAGGGCAGACCGGTTGCAGCTTGTATTGTCTACAAGACACTTCTTCAATGGAGATCTTTTGAAGCAGAGAAGACAAATATATTTGACAGAATTATTCACACAATCAGATCTTCTATAGAGAGTCAAGAAAATATCAGCGATCTTGCCTATTGGCTTTCAACCTCTTCCACCCTTCTCTACCTTCTTCAAAGTTCACTCAAGGCAACCAATACAAGTACTGTAGCTTCAAATCGCAACCGAGCTTCTCCTGCAACCTTATTTGGTCGTATGGCATATGGTCTTCGATCATCGTCAGTGGGCATGGGAATGTCCAGTGGATACAGTGGAATGGTGGGCAAGACAAACAATCAATCTAAAGTTGAAGCCAAGTACCCAGCACTGCTTTTTAAGCAACATCTGGCTGCATGCATTGAAAAATTGTTTGGGATGATACGTGATAATTTGAAGAAAGAAATTAGCCCTTTCTTGCATCTATGCATACAGGCACCAAGATCAGTGAGGGCCAGATCAATAAGAGGGTCATCTAAAAATATTCATTCAAACATTGTTGCAAAACAGCAAGCATCAAGTATTCACTGGCAAAGCATTGTCAATAAGCTAGACCAGACATTGGATATAATGTTGGAAAACCATGTTCCCTCCATGATCATGAGAAAAATCTTCTTCCAAGTTTTCTCATTCATAAATGTTCAGCTTTTCAATAGCTTGTTACTACGACGTGAGTGTTGTTCCTTCAGTAATGGAGAGTACTTAAAGTTGGGTCTGCAGGAGTTGGAGCAATGGTGTAACAAAGCTACCGATACGCATGCTGGCAATTCCTGGGATGAACTTCAACACATAAGACAGGCAGTAGGATTTCTGGTGTTACATCAGAAGTCCCAGAAAAGTTTGAATGAGATCACAGATGAATTGTGCCCGATTCTAAGCATTCCACAAATATATCGCATAGGCACGATGTTCTGGGACGACAAATATGGAACTCAGGGATTATCTCCTGATATAATTGGAAAAATGAGACTCCTATTGGCAGAAGACTCCATAAACATCCCAAACAACTCTTTCCTGCTTGATGTGGATTCAAGCATACCATTTTCAATGGAAGAAATATGCCGGTCCTTTGGCGAGGACGGCGGAGTTAACCTGTCCAACGTCGACCCGCCACCACTTATAAGACAAAGATCAGATTTCCATTTTCTAGTGCAGCAACTGACTGAATGA 4707 42.13 MGTPVNIIVGSHVWVEDSEDAWIEGQVTEIKGKNATILTTNAKNIVAEISSIYPKDTEAPPAGVDDMTKLAYLHEPGVLHNLACRFSLNEIYTYTGNILIAVNPFRRLPHLYDIHMMEQYKGATFGELSPHLFAVADACYRAMINEQGSQSILVSGESGAGKTETTKMLMRYLAFMGGRSDTEGRTVEQQVLESNPVLEAFGNAKTVKNNNSSRFGKFVEIQFDKNWKISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKFKVGDPRTFHYLNQTNCYEVANVDDSREYLETRNAMDVVGINQDEQDAIFRVVAAILHLGNVEFMKGKEFDSSKVKDEKSNYHLQTAAELLMCDVKSLEHSLCQRVIVTPDGNITKPLDPDSAALSRDALAKTVYSRLFDWIVDKINSSIGQDPNAASLIGVLDIYGFESFKVNSFEQLCINLTNEKLQQHFNQHVFKMEQEEYTKEEINWSYVEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKMYQTYKGHKRFSKPKLARTDFTINHYAGDVTYQADQFLDKNKDYVVAEHQALLNASQCFFVANLFPPLPEETSKQSKFSSIGTRFKQQLQALMETLNTTEPHYIRCVKPNTVLKPGIFENYNVLNQLRCGGVLEAIRISCAGYPTKRTFDEFLDRFGMLAPDISDGSDEKSACIAICDRMGLKGYQIGKTKVFLRAGQMAELDARRTEILANAVRLIQRQIRTYLTRKEFIALRRATIHMQKLWRGQLARKLYEQMRREAASIRIQKHARSHADRKSYKRLLASAIVIQTGMRAMAARNEYRHRRRTKAAIIVQTEWRRASAISAYKQQQKATLALQCLWRSKVARKELRKLKMAARETGALKEAKDKLEKRVEELTWRLDFEKHLRMDVEEAKGQEVAKLQNALEEMQGQLDEANAAIIREREAAKLAIEQAPPVIKEVPVVDETKLEILKNHNEELEGVVGELKKKVEEFEEKYAEVERESKARLKEAEEAQLKSMQLRETIERLESNLSSLESENQVLRQQALVAADNESLSEELETLKSKIGSLEAENEVLRNRTVAVEHIPVPAAALTESKTLDNGHLIEEEIKSTKEPSTVPIKSTKEQSTVPILAKQGSLTEKQQENHDVLIKCLAEDKRFDKGRPVAACIVYKTLLQWRSFEAEKTNIFDRIIHTIRSSIESQENISDLAYWLSTSSTLLYLLQSSLKATNTSTVASNRNRASPATLFGRMAYGLRSSSVGMGMSSGYSGMVGKTNNQSKVEAKYPALLFKQHLAACIEKLFGMIRDNLKKEISPFLHLCIQAPRSVRARSIRGSSKNIHSNIVAKQQASSIHWQSIVNKLDQTLDIMLENHVPSMIMRKIFFQVFSFINVQLFNSLLLRRECCSFSNGEYLKLGLQELEQWCNKATDTHAGNSWDELQHIRQAVGFLVLHQKSQKSLNEITDELCPILSIPQIYRIGTMFWDDKYGTQGLSPDIIGKMRLLLAEDSINIPNNSFLLDVDSSIPFSMEEICRSFGEDGGVNLSNVDPPPLIRQRSDFHFLVQQLTE* 1569
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 19990490 20001759 - CsaV3_7G031590.1 Csa07g02070 537633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02070 1568 Coils Coil 876 910 - -
Csa07g02070 1568 Gene3D - 784 834 - -
Csa07g02070 1568 Gene3D - 733 783 - -
Csa07g02070 1568 ProSiteProfiles Dilute domain profile. 1192 1507 IPR002710 -
Csa07g02070 1568 CDD MyosinXI_CBD 1143 1530 IPR037975 GO:0007015
Csa07g02070 1568 SMART MYSc_2a 56 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 ProSiteProfiles Myosin motor domain profile. 62 731 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 Gene3D - 667 729 - -
Csa07g02070 1568 ProSiteProfiles IQ motif profile. 734 761 IPR000048 GO:0005515
Csa07g02070 1568 Pfam IQ calmodulin-binding motif 855 874 IPR000048 GO:0005515
Csa07g02070 1568 Pfam IQ calmodulin-binding motif 807 826 IPR000048 GO:0005515
Csa07g02070 1568 Pfam IQ calmodulin-binding motif 784 803 IPR000048 GO:0005515
Csa07g02070 1568 Pfam IQ calmodulin-binding motif 737 754 IPR000048 GO:0005515
Csa07g02070 1568 Pfam IQ calmodulin-binding motif 758 777 IPR000048 GO:0005515
Csa07g02070 1568 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 SMART iq_5 804 826 IPR000048 GO:0005515
Csa07g02070 1568 SMART iq_5 756 778 IPR000048 GO:0005515
Csa07g02070 1568 SMART iq_5 852 874 IPR000048 GO:0005515
Csa07g02070 1568 SMART iq_5 781 803 IPR000048 GO:0005515
Csa07g02070 1568 SMART iq_5 733 755 IPR000048 GO:0005515
Csa07g02070 1568 SMART iq_5 829 851 IPR000048 GO:0005515
Csa07g02070 1568 Coils Coil 972 1048 - -
Csa07g02070 1568 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Csa07g02070 1568 Coils Coil 1055 1082 - -
Csa07g02070 1568 CDD MYSc_Myo11 76 719 IPR036018 -
Csa07g02070 1568 Coils Coil 915 949 - -
Csa07g02070 1568 ProSiteProfiles IQ motif profile. 782 808 IPR000048 GO:0005515
Csa07g02070 1568 ProSiteProfiles IQ motif profile. 805 834 IPR000048 GO:0005515
Csa07g02070 1568 Gene3D Kinesin motor domain 65 662 IPR036961 -
Csa07g02070 1568 Gene3D - 439 623 - -
Csa07g02070 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 882 IPR027417 -
Csa07g02070 1568 Pfam Myosin head (motor domain) 64 719 IPR001609 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 ProSiteProfiles IQ motif profile. 757 786 IPR000048 GO:0005515
Csa07g02070 1568 PANTHER MYOSIN 19 1561 - -
Csa07g02070 1568 Pfam Myosin N-terminal SH3-like domain 9 43 IPR004009 GO:0003774|GO:0005524|GO:0016459
Csa07g02070 1568 SMART DIL_2 1382 1489 IPR002710 -
Csa07g02070 1568 PANTHER MYOSIN-12 19 1561 - -
Csa07g02070 1568 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 785 IPR027417 -
Csa07g02070 1568 ProSiteProfiles IQ motif profile. 853 882 IPR000048 GO:0005515
Csa07g02070 1568 Pfam DIL domain 1383 1486 IPR002710 -
Csa07g02070 1568 Gene3D - 252 310 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00286 Csa-Chr2:1957017 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa03g01150 Csa-Chr3:9010824 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa06g02004 Csa-Chr6:18024337 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa07g01609 Csa-Chr7:16571902 Csa07g02070 Csa-Chr7:19990490 0 dispersed
Csa07g02070 Csa-Chr7:19990490 Csa06g00724 Csa-Chr6:5908642 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02070 K10357 - csv:101207221 3007.62