Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02071 ATGGCCTTTGAATCAAACCAAACTAATGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCACATTCCCAATCATCTCCCACTTCACGATTATGTTTTCCAAAATCTCTCAAAATTTGCCTCACGCCCATGTTTGATCAACGGCGCCACCGGGGATGTTTACACCTACCATGACGTTCAGCTAACAGCCCGTCGAGTCGCCGCTGGCCTACACAACCTCGGTATTAAGAAGGGTGATGTTGTCATGAATTTACTTCCCAATTCCCCGGAGTTCGTCTTCACTTTCCTTGGCGCGTCTTACCGGGGCGCCATCATGACGGCAGCCAACCCTTTTTACACTGCGGTGGAAATAGCCAAACAGGCCAAAGCCGCCAATGCGAAATTAATCGTGACTATGGCTTGCTTCTACGATCGGGTTAAGGATTTGGGTGAAAATGGTGTCAAAATCGTATGTGTTGATTTTTCTGCTGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCTGACGAATCTCTCATGTCGCGGGTGGATTTTTCTTCCGATGATGTGGTGGCGCTACCGTACTCCTCTGGGACTACCGGTTTGCCAAAGGGAGTTATGTTGACTCATAAAGGGTTAATCACAAGTGTGGCTCAACAAGTCGACGGCCAAAATCCGAACCTATATTATCGTGGCGATGATGTAATCCTCTGTGTACTGCCGCTTTTCCATATCTATTCACTCAATTCGATTTTGCTGTGTGGGCTACGCGCCGGTGCTGCCATTATGATTATGCAAAAGTTCGACATCGTTTCACTTTTTCAATTAATTGGGAAATACAAAATCTCGATCGTGCCCATCGTGCCGCCAATCTTCTTGGCCATTGCTAAGTCAGCTGAGTTTGAAAAATACGACGTGTCGTCCGTAAGGGTTCTAAAATCCGGCGGAGCACCACTGGGGAAGGAGTTGGTAGAGGCCGTGAAGGCAAAATTTCCAGCGGCGATTCTCGCACAAGGATACGGAATGACTGAGGCTGGTCCGGTTCTAACTATGAGTTTGGCTTTTGCAAAAGAACCGTTTCAAGTGAAATTCGAAGCATGCGGAACTGTGGTCAGAAATGCAGAGATGAAGATAGTCGACCCGGAAACCGGCGTCTCCTTACCTGAAAATTCCGCAGGTGAGATTTGTATTAGAGGTGATCAAATCATGAAGGGATATTTGAATGATTTGGAGTCAACCAAGAGGACTATTGATAAAGAAGGATGGCTTCACACGGGCGACATCGGCTTCATCGATGACAACAATGAGCTCTTCATTATAGACCGGCTTAAGGAGCTTATCAAGTTCAAAACATTTCAAGTGGCACCCGCCGAACTGGAAGCACTTCTTATCACTCACCCAAAACTACGTGACGCTGCTGTTATTGGTATGCCAGACGTGGAGGCAGGAGAAGTACCGGTGGCGTTTGTGGTGGAGGAGAAGAGTGGTGCAAGTGCAACAACAACAGAAGAAGAAGTAAAAGAATTCATAGCAAAGCAAGTGATTTTCTACAAAAGGCTAAAGCGTGTGTTTTTTGTCAACGCTATTCCAAAGGCACCATCTGGCAAAATCCTCAGGAAAGAAATAAGGGCAAATTTGGCATCCGGCGCTTACAATTAA 1638 46.21 MAFESNQTNEFIFRSKLPDIHIPNHLPLHDYVFQNLSKFASRPCLINGATGDVYTYHDVQLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLGENGVKIVCVDFSAEGCLHFSVLSGADESLMSRVDFSSDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGQNPNLYYRGDDVILCVLPLFHIYSLNSILLCGLRAGAAIMIMQKFDIVSLFQLIGKYKISIVPIVPPIFLAIAKSAEFEKYDVSSVRVLKSGGAPLGKELVEAVKAKFPAAILAQGYGMTEAGPVLTMSLAFAKEPFQVKFEACGTVVRNAEMKIVDPETGVSLPENSAGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFIDDNNELFIIDRLKELIKFKTFQVAPAELEALLITHPKLRDAAVIGMPDVEAGEVPVAFVVEEKSGASATTTEEEVKEFIAKQVIFYKRLKRVFFVNAIPKAPSGKILRKEIRANLASGAYN* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20008998 20011078 - CsaV3_7G031600.1 Csa07g02071 537634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02071 545 SUPERFAMILY Acetyl-CoA synthetase-like 10 540 - -
Csa07g02071 545 Gene3D - 5 436 IPR042099 -
Csa07g02071 545 CDD 4CL 22 534 - -
Csa07g02071 545 Gene3D - 437 541 IPR045851 -
Csa07g02071 545 Pfam AMP-binding enzyme C-terminal domain 451 529 IPR025110 -
Csa07g02071 545 Pfam AMP-binding enzyme 35 442 IPR000873 -
Csa07g02071 545 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Csa07g02071 545 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 540 - -
Csa07g02071 545 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 540 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02071 Csa-Chr7:20008998 Csa07g02073 Csa-Chr7:20023534 0 dispersed
Csa07g02071 Csa-Chr7:20008998 Csa07g02072 Csa-Chr7:20015822 0 tandem
Csa03g02957 Csa-Chr3:28139017 Csa07g02071 Csa-Chr7:20008998 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02071 K01904 - csv:101218595 1072.38