Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02072 ATGGCCTTCGAATCAAACGAAACCAATGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCACATTCCCAATCATCTTCCACTCCACGACTATGTATTCCAAAATCTCTCCAAATTCGCCTCACGCCCCTGTTTGATCAACGGTGCCACCGGGGATGTTTACACCTACCATGACGTTCAGCTAACAGCCCGTCGAGTCGCCGCTGGCCTACACAACCTTGGTATTAAGAAGGGTGATGTTGTCATGAATTTACTTCCCAATTCCCCGGAGTTTGTCTTCACCTTCCTTGGCGCGTCTTACCGGGGCGCCATCATGACAGCAGCCAATCCTTTTTACACGGCTGTGGAAATTGCTAAACAGGCCAAAGCTGCCAATGCGAAATTGATAGTGACAATGGCTTGTTTTTACGATCGGGTTAAGGATTTGGCTGAAAACGGTGTTCAAATTGTTTGTGTTGATTTTGCTGTAGAGGGTTGTTTGCATTTTTCTGTTTTGAGTGGGGCTGATGAATCTCTTGCGCCGTTGGTGGATTTTTCCTCTAATGACGTGGTGGCATTACCGTACTCCTCTGGCACTACCGGTTTGCCGAAAGGAGTTATGCTGACACATAAAGGGTTAATCACAAGTGTAGCGCAACAAATGGATGGCCAAAATCCAAATCTCTATTATCACAGAAACGATGTTATCCTCTGTGTGCTGCCGTTTTTCCATATCTATTCACTCAATTCGATTTTGCTGTGTGGACTACGAGTCGGCGCTGCCATTATGATTATGCAAAAATTTGACATCGTTGCACTTTTACAATTGATTGAGAAACATAGAATCTCGATCATGCCCATCGTGCCGCCAATCTTTTTGGCCATCGCTAAGTCCCCAGAATTTGAAAAGTACGACGTGTCGTCCGTGAGGGTTCTAAAATCTGGTGGAGCTCCACTAGGGAAGGAGTTGGAAGATGCCGTGAGGGAGAAATTTCCAACGGCGATTCTCGGACAAGGGTATGGAATGACCGAGGCCGGTCCAGTTCTATCCATGAGCTTAGCTTTTGCGAAAGAACCGTTCCAAGTAAAAGCCGGAGCCTGCGGAACTGTGGTCCGCAATGCAGAGATGAAGATTGTTGACACCGAAACCGGCGCCTCATTGCCGGCGAATTCCTCCGGAGAAATTTGTATTAGAGGTGATCAAATCATGAAAGGATATTTGAATGATTTGGAGTCAACAAAGAGGACTATTGATAAAGAAGGATGGCTTCACACCGGCGACATTGGCTTTGTCGACGACGACAACGAGCTCTTCATCGTTGATCGGCTTAAGGAACTAATAAAATTCAAGGCATTTCAAGTGGCTCCTGCTGAGCTTGAGGCCCTTCTTATCACACATCCTAAACTATCTGATGCTGCCGTCATTGGTATGCCGGATGTGGAGGCGGGAGAAGTGCCGGTGGCGTTTGTGATGAAGGCGAACGGCGGTGCAATAAGCGAGGAAGAAGTAAAGCAATTTATAGCAAAACAAGTTGTTTTCTACAAAAGACTAAAACGTGTGTTTTTCGTTAATGCTATTCCAAAGGCTCCGTCAGGCAAAATCCTTAGAAAGGAACTCAGAGCAAAACTTGCTTCGGGTGCTTACAATTAG 1629 45.92 MAFESNETNEFIFRSKLPDIHIPNHLPLHDYVFQNLSKFASRPCLINGATGDVYTYHDVQLTARRVAAGLHNLGIKKGDVVMNLLPNSPEFVFTFLGASYRGAIMTAANPFYTAVEIAKQAKAANAKLIVTMACFYDRVKDLAENGVQIVCVDFAVEGCLHFSVLSGADESLAPLVDFSSNDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQMDGQNPNLYYHRNDVILCVLPFFHIYSLNSILLCGLRVGAAIMIMQKFDIVALLQLIEKHRISIMPIVPPIFLAIAKSPEFEKYDVSSVRVLKSGGAPLGKELEDAVREKFPTAILGQGYGMTEAGPVLSMSLAFAKEPFQVKAGACGTVVRNAEMKIVDTETGASLPANSSGEICIRGDQIMKGYLNDLESTKRTIDKEGWLHTGDIGFVDDDNELFIVDRLKELIKFKAFQVAPAELEALLITHPKLSDAAVIGMPDVEAGEVPVAFVMKANGGAISEEEVKQFIAKQVVFYKRLKRVFFVNAIPKAPSGKILRKELRAKLASGAYN* 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20015822 20017932 - CsaV3_7G031610.1 Csa07g02072 537635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02072 542 Pfam AMP-binding enzyme 35 442 IPR000873 -
Csa07g02072 542 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 537 - -
Csa07g02072 542 SUPERFAMILY Acetyl-CoA synthetase-like 10 538 - -
Csa07g02072 542 Gene3D - 5 436 IPR042099 -
Csa07g02072 542 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Csa07g02072 542 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Csa07g02072 542 Gene3D - 437 538 IPR045851 -
Csa07g02072 542 CDD 4CL 22 532 - -
Csa07g02072 542 PANTHER 4-COUMARATE--COA LIGASE 2-LIKE 7 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00587 Csa-Chr2:4235452 Csa07g02072 Csa-Chr7:20015822 0 dispersed
Csa02g02790 Csa-Chr2:24252651 Csa07g02072 Csa-Chr7:20015822 0 dispersed
Csa03g02957 Csa-Chr3:28139017 Csa07g02072 Csa-Chr7:20015822 0 dispersed
Csa07g02071 Csa-Chr7:20008998 Csa07g02072 Csa-Chr7:20015822 0 tandem
Csa07g02072 Csa-Chr7:20015822 Csa07g02073 Csa-Chr7:20023534 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02072 K01904 - csv:101218361 1069.3