Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02075 ATGAGAGATGATAGAATGGCCACCTCCTTGATTGGTGGTCTCATTCATCAACCTTTAGTACCCAATTTCTCAATTAATTCCAACTTTCTTAACTTCCTGATTTTGACCCTGCTTTTGGTTTTGCAATTCATTCCTCCTTTTTCTGTTTCAGCTTCTTGCAACCCATCTGATCGGGCTTCTCTCTGGTATTTTGTCAATTCTTCATCTGTTTCATCGTCTTTCAATTGGTCTTCCACGATTGATTGTTGTTCCTGGGAAGGAGTGATTTGTGAAGCAATCGCTAATAGCGACGACAACCGAGTTACTCAGCTTTTGTTGCCTTCTAGAGGTCTTCGTGGTGAATTCCCTTCAACTCTCACAAACCTTACTTTTCTCTCTCACCTCGATCTCTCGCACAATCGTTTTTATGGTTCTCTCCCTTCTGATTTCTTTAAGTCCTTAAGTCATCTCAAGGAACTGAATTTGAGCTACAACCTTCTCACTGGCCAGTTGCCGCCACTGCCATCGCCGTCTTCATCGTCCGGACTCTTGATTGAGACTCTGGATTTGTCCAGTAATCGATTCTATGGGGAAATACCTGCTTCGTTTATCCAGCAAGTGGCAATTTCGGGGAGTTTGACCAGTTTCAATGTCCGCAACAATAGTTTTACAGGTCTCATTCCAACCTCCTTTTGTGTTAATACTACATCCATAAGCTCCGTCAGGTTATTAGACTTTTCCAATAATGGATTCGGCGGTGGAATACCTCAAGGGCTAGAGAAATGCCACAATTTGGAGGTTTTTCGAGCGGGTTTCAATAGTCTTACCGGTCCTATTCCCTCCGACCTTTACAATGTTCTCACTCTAAAGGAGCTTTCTTTACATGTTAATCACTTCTCGGGAAACATCGGCGATGGAATCGTTAATCTCACCAACCTCAGAATCCTGGAATTGTTCTCGAATTCTTTGATTGGTCCCATTCCAACAGATATTGGAAAGCTCTCCAACCTGGAACAGTTATCGCTTCACATTAACAATCTGACTGGCTCTCTGCCCCCATCATTGATGAATTGCACTAATCTTACTTTGTTAAATTTGCGGGTTAATAAGCTGCAAGGAGACCTCTCTAATGTTAATTTCTCTCGCCTTGTTGGCCTCACCACACTTGACCTGGGCAACAATATGTTCACAGGTAATATACCATCGACTCTTTATTCCTGCAAATCTCTGAAGGCAGTTAGACTGGCTAGTAATCAGTTATCTGGAGAGATCACTCACGAAATTGCAGCGCTTCAATCACTGTCCTTCATTTCAGTTTCCAAGAATAATCTAACCAATTTAAGTGGAGCACTAAGGAATTTGATGGGTTGCAAAAACCTTGGAACTCTTGTGATGTCCGGTAGTTATGTTGGTGAAGCGTTGCCGGATGAGGATATGATTGTAGATGCTAACACATTCCAAAATATCCAGGCTTTGGCTATTGGAGCTAGTCAGTTAACTGGTAAAGTACCCTCATGGATACAAAAGCTCAGGAGTCTAGAGGTCTTGGACCTGTCCTTTAATCGCCTTGTGGGTTCAATACCTGAATGGTTAGGTGATTTTCCGAGTCTGTTTTATATTGACTTGTCTAATAACAGAATTTCCGGAAAATTCCCCACCCAGCTTTGCAGACTGCAGGCTTTGATGTCGCAGCAGATTTTAGATCCTGCCAAGCAGAGTTTTCTTGCATTGCCTGTCTTTGTTGCGCCCAGTAATGCTACTAATCAGCAATACAATCAGCTCTCCAGCCTTCCGCCAGCTATATACCTGGGCAACAACACCATAAGTGGCCCTATTCCCTTGGAGATCGGGCAATTAAAGTTTATACATATACTAGACCTCAGCAACAACAGCTTCTCCGGTAGCATCCCAGATACCATTTCCAATCTCAGCAACTTGGAGCGATTAGACCTCTCTCATAACCACCTAACTGGTGAAATCCCCCATTCCCTCAAAGGCCTCCACTTCTTGTCTTGGTTTAGCGTAGCCTTTAACGAACTTCAAGGACCAATACCATCAGGGGGTCAGTTCGATACGTTTCCTAGCTCTAGCTACGAAGGAAACTCAGGGTTGTGCGGTCCTCCTATAGTACAGCGATCTTGCTCTAGCCAGACCAGAATAACTCATTCCACCGCTCAAAATAAAAGCTCCAGTAAGAAACTTGCCATAGGATTAGTCGTGGGTACCTGTTTAAGTATTGGTCTCATCATCACCCTGCTAGCGTTGTGGATATTATCCAAGAGGAGGATTGATCCTAGAGGGGATACCGACATAATAGATTTGGACATAATTTCTATTAGTTCTAATTACAATGCTGACAACAACACTAGCATAGTCATTTTGTTTCCAAATAATGCCAACAACATCAAGGAGCTTACCATTTCTGACATATTGAAGGCCACTGATGATTTCAATCAAGAAAACATAATTGGCTGTGGTGGTTTTGGATTGGTTTACAAAGCAACATTAGCAAATGGGACGAGACTTGCTGTAAAGAAACTCTCGGGAGACTTGGGACTGATGGAAAGGGAATTTAAAGCAGAAGTGGAGGCTTTGTCTGCAGCCAAACACAAGAACCTGGTTACTCTTCAAGGTTACTGTGTGCATGAAGGCAGTCGACTGCTAATGTATTCATACATGGAAAACGGAAGTTTAGATTATTGGTTGCATGAGAAGGTTGACGGTGCATCTCAACTTGATTGGCCAACTCGGTTGAAGATTATACGAGGATCAAGTTGTGGATTGGCCTACATGCACCAAATATGTGAGCCACATATTGTACACCGTGATATTAAGTCCAGTAACATCCTGCTCGATGAGAAATTTGAAGCTCATGTAGCAGATTTTGGACTATCTAGATTGATCAATCCTTACCAGACTCATGTTACAACCGAACTTGTTGGCACCTTAGGCTACATTCCTCCAGAATATGGACAAGCATGGGTCGCCACTTTGAGAGGAGATATGTACAGCTTTGGTGTGGTCGTGCTCGAGTTGCTTACTGGCAAAAGACCTGTAGAGATATCAAAGCCAAAGGCATCACGAGAATTGGTTGGCTGGGTGCAACAATTGAGAAATGAGGGCAAACAAGATGAAGTCTTTGACCCCATTTTAAAAGGGAAGGGCTTTGAAGAAGAGATGATCCAGGTTCTCGATATTGCCTGCATGTGTGTCAGTCAGAACCCCTTTAAAAGACCTACCATCAAGGAAGTTGTGGATTGGTTGAAAGATGTGGGGGAGACCAAAGTTCCCCAAAGTAAGGATGTGTGA 3288 43.13 MRDDRMATSLIGGLIHQPLVPNFSINSNFLNFLILTLLLVLQFIPPFSVSASCNPSDRASLWYFVNSSSVSSSFNWSSTIDCCSWEGVICEAIANSDDNRVTQLLLPSRGLRGEFPSTLTNLTFLSHLDLSHNRFYGSLPSDFFKSLSHLKELNLSYNLLTGQLPPLPSPSSSSGLLIETLDLSSNRFYGEIPASFIQQVAISGSLTSFNVRNNSFTGLIPTSFCVNTTSISSVRLLDFSNNGFGGGIPQGLEKCHNLEVFRAGFNSLTGPIPSDLYNVLTLKELSLHVNHFSGNIGDGIVNLTNLRILELFSNSLIGPIPTDIGKLSNLEQLSLHINNLTGSLPPSLMNCTNLTLLNLRVNKLQGDLSNVNFSRLVGLTTLDLGNNMFTGNIPSTLYSCKSLKAVRLASNQLSGEITHEIAALQSLSFISVSKNNLTNLSGALRNLMGCKNLGTLVMSGSYVGEALPDEDMIVDANTFQNIQALAIGASQLTGKVPSWIQKLRSLEVLDLSFNRLVGSIPEWLGDFPSLFYIDLSNNRISGKFPTQLCRLQALMSQQILDPAKQSFLALPVFVAPSNATNQQYNQLSSLPPAIYLGNNTISGPIPLEIGQLKFIHILDLSNNSFSGSIPDTISNLSNLERLDLSHNHLTGEIPHSLKGLHFLSWFSVAFNELQGPIPSGGQFDTFPSSSYEGNSGLCGPPIVQRSCSSQTRITHSTAQNKSSSKKLAIGLVVGTCLSIGLIITLLALWILSKRRIDPRGDTDIIDLDIISISSNYNADNNTSIVILFPNNANNIKELTISDILKATDDFNQENIIGCGGFGLVYKATLANGTRLAVKKLSGDLGLMEREFKAEVEALSAAKHKNLVTLQGYCVHEGSRLLMYSYMENGSLDYWLHEKVDGASQLDWPTRLKIIRGSSCGLAYMHQICEPHIVHRDIKSSNILLDEKFEAHVADFGLSRLINPYQTHVTTELVGTLGYIPPEYGQAWVATLRGDMYSFGVVVLELLTGKRPVEISKPKASRELVGWVQQLRNEGKQDEVFDPILKGKGFEEEMIQVLDIACMCVSQNPFKRPTIKEVVDWLKDVGETKVPQSKDV* 1096
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20035071 20038358 - CsaV3_7G031640.1 Csa07g02075 537638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02075 1095 Pfam Protein kinase domain 811 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02075 1095 Gene3D Ribonuclease Inhibitor 59 172 IPR032675 -
Csa07g02075 1095 PANTHER OS06G0692500 PROTEIN 35 1084 - -
Csa07g02075 1095 Gene3D Transferase(Phosphotransferase) domain 1 886 1092 - -
Csa07g02075 1095 Pfam Leucine rich repeat N-terminal domain 56 90 IPR013210 -
Csa07g02075 1095 SUPERFAMILY L domain-like 75 317 - -
Csa07g02075 1095 PRINTS Leucine-rich repeat signature 506 519 - -
Csa07g02075 1095 PRINTS Leucine-rich repeat signature 636 649 - -
Csa07g02075 1095 SUPERFAMILY Protein kinase-like (PK-like) 793 1081 IPR011009 -
Csa07g02075 1095 Gene3D Ribonuclease Inhibitor 439 715 IPR032675 -
Csa07g02075 1095 ProSitePatterns Protein kinases ATP-binding region signature. 816 839 IPR017441 GO:0005524
Csa07g02075 1095 SUPERFAMILY L domain-like 228 560 - -
Csa07g02075 1095 ProSiteProfiles Leucine-rich repeat profile. 638 661 IPR001611 GO:0005515
Csa07g02075 1095 SMART LRR_typ_2 147 175 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 327 351 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 376 400 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 503 527 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 636 659 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 424 446 IPR003591 -
Csa07g02075 1095 SMART LRR_typ_2 122 146 IPR003591 -
Csa07g02075 1095 SMART LRR_sd22_2 636 662 - -
Csa07g02075 1095 SMART LRR_sd22_2 503 522 - -
Csa07g02075 1095 SMART LRR_sd22_2 303 332 - -
Csa07g02075 1095 Pfam Leucine rich repeat 616 673 IPR001611 GO:0005515
Csa07g02075 1095 Pfam Leucine rich repeat 125 188 IPR001611 GO:0005515
Csa07g02075 1095 Pfam Leucine rich repeat 481 540 IPR001611 GO:0005515
Csa07g02075 1095 SMART serkin_6 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02075 1095 Gene3D Phosphorylase Kinase; domain 1 771 885 - -
Csa07g02075 1095 PANTHER LEUCINE RICH REPEAT KINASE 2 35 1084 - -
Csa07g02075 1095 ProSiteProfiles Protein kinase domain profile. 810 1081 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02075 1095 Gene3D Ribonuclease Inhibitor 298 438 IPR032675 -
Csa07g02075 1095 SUPERFAMILY L domain-like 479 705 - -
Csa07g02075 1095 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Csa07g02075 1095 Gene3D Ribonuclease Inhibitor 178 297 IPR032675 -
Csa07g02075 1095 ProSiteProfiles Leucine-rich repeat profile. 149 171 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00977 Csa-Chr5:8900193 Csa07g02075 Csa-Chr7:20035071 0 dispersed
Csa05g01323 Csa-Chr5:14009386 Csa07g02075 Csa-Chr7:20035071 3.99E-112 dispersed
Csa05g01325 Csa-Chr5:14029672 Csa07g02075 Csa-Chr7:20035071 1.11E-109 dispersed
Csa06g02833 Csa-Chr6:24710337 Csa07g02075 Csa-Chr7:20035071 1.88E-37 dispersed
Csa07g02075 Csa-Chr7:20035071 Csa03g01135 Csa-Chr3:8937734 3.40E-146 dispersed
Csa07g02075 Csa-Chr7:20035071 Csa03g01130 Csa-Chr3:8912410 3.74E-136 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78505 PF00069 Pkinase 9.50E-42 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02075 - - csv:101217884 2083.92