Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02084 ATGGCGAAGATCTCAAATCCTTCTCACAACAATTCCATTTCCACTACTACTGACCATGATCCTCACTCTTCTTCTTCTTCTTCTTCTTCCTCAATCCTTCATAGCCAGAGGAAGGTACTGACGAAGCGTACGCGTAAGTCCACTCCTCGTGATTCTCCCGCTCAACGTAGCTCTGTTTACCGCGGAGTCACTAGGCATAGATGGACTGGACGGTTTGAGGCGCATTTGTGGGATAAGAATTGCTGGAATGAAGGACAGAACAAGAAAGGACGTCAAGTGTATTTAGGAGCGTATGATGATGAAGACGCAGCTGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTAACGTACCAAGATGAGCTTAAAGAAATGGAAGGCCAATCAAGAGAAGAGTATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTCTCTCGCGGGGTTTCAAAGTACAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCAGAGTGTTTGGCAACAAATACCTTTACCTTGGAACATACGCTACCCAAGAAGAAGCTGCCACGGCTTACGACAAGGCAGCCATAGAATACCGTGGCCTTAACGCCGTTACAAATTTCGACCTCAGCCGTTACATCAAATGCCTTCGTCCGGGGGAACAGGATATCCCAAACACTAACCGTCCACCAAACCCTAACGCCGGCGAAACACCATCAGAATTTGACCCCAATTCCCTCCTCGGATTCACTTTCCCGTCACAATGCTCCAGCTCCGGTCAACCCTCCATCGAGCCACTTCCGGAAGTTGGCGACGGCGACTGCTCCTCCTCCTCCACGGCGATCCAGCTCCTTCTCCATTCCTCGAAATTCAAAGACATAATCGAAAGAACATCCACTGCAGAGACTCCGTCGGAATCTGATCGGCCACGTCGATGTTTTCCTGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGATTTTGCCGAAGGCGACGACAGCATTTTTGGGTACCTAAATTCGTTTTTACCTTCATCGGTTTTTCACTGCGAACTTGATGCTTAA 1104 47.92 MAKISNPSHNNSISTTTDHDPHSSSSSSSSSILHSQRKVLTKRTRKSTPRDSPAQRSSVYRGVTRHRWTGRFEAHLWDKNCWNEGQNKKGRQVYLGAYDDEDAAAHAYDLAALKYWGTETVLNFPLLTYQDELKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDKAAIEYRGLNAVTNFDLSRYIKCLRPGEQDIPNTNRPPNPNAGETPSEFDPNSLLGFTFPSQCSSSGQPSIEPLPEVGDGDCSSSSTAIQLLLHSSKFKDIIERTSTAETPSESDRPRRCFPDDIQTYFDCTQDSGDFAEGDDSIFGYLNSFLPSSVFHCELDA* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20100472 20106382 + CsaV3_7G031730.1 Csa07g02084 537647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02084 367 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 PRINTS Ethylene responsive element binding protein signature 201 221 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 MobiDBLite consensus disorder prediction 230 254 - -
Csa07g02084 367 Pfam AP2 domain 58 117 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 Pfam AP2 domain 160 211 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 MobiDBLite consensus disorder prediction 1 37 - -
Csa07g02084 367 Gene3D AP2/ERF domain 160 221 IPR036955 GO:0003700|GO:0006355
Csa07g02084 367 Gene3D AP2/ERF domain 59 127 IPR036955 GO:0003700|GO:0006355
Csa07g02084 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 38 352 - -
Csa07g02084 367 SMART rav1_2 59 131 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 SMART rav1_2 161 225 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 MobiDBLite consensus disorder prediction 1 60 - -
Csa07g02084 367 MobiDBLite consensus disorder prediction 235 254 - -
Csa07g02084 367 ProSiteProfiles AP2/ERF domain profile. 59 125 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 SUPERFAMILY DNA-binding domain 58 126 IPR016177 GO:0003677
Csa07g02084 367 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR-RELATED 38 352 - -
Csa07g02084 367 ProSiteProfiles AP2/ERF domain profile. 161 219 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 CDD AP2 160 221 IPR001471 GO:0003700|GO:0006355
Csa07g02084 367 SUPERFAMILY DNA-binding domain 160 221 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02829 Csa07g02084 CCT
Csa03g02829 Csa07g02084 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01916 Csa-Chr1:16023418 Csa07g02084 Csa-Chr7:20100472 8.95E-125 dispersed
Csa04g02504 Csa-Chr4:24869562 Csa07g02084 Csa-Chr7:20100472 6.49E-77 dispersed
Csa05g02684 Csa-Chr5:27738310 Csa07g02084 Csa-Chr7:20100472 8.95E-90 dispersed
Csa07g02084 Csa-Chr7:20100472 Csa06g03048 Csa-Chr6:26200005 1.06E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32368 PF00847 AP2 1.30E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02084 K09285 - csv:101206499 701.819