Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02085 ATGATTGGCGACAAGAAATCGATTATACCTCGTCAATCTTCCTATAACTCTTTGTATTTGAATCCCCTCACTGACCTCCGCCACAACCGTAGCTGCAGCGACGGCGGCGGATTCAGGCAAGGTAAAGAGAACTTAACCCCTAATACGAAGGATAAACAGAGAGATGAACCTGCACCTGCAGTGCTTTGCGACAAAGAAAATGTGATTCCTGCTAATGGGTTTTGTGCTAATTCGAAGCAGCAATTTGGGGATTTTAAGTCATTTTCTAATGGGAAGGCTTTGAAGCCTTCTTCACTTCATCTTTGTATGCAAATGAACGAGCCTGATAAGGTTTTTGCATCTAGATTGTGGGATGGAACTGATTCTGAACATTCGAGTTCTTTGAAGATATGGGACTTTTCGGATTCAGAAGCTGCTCCAGCTTCCTCATGGTCTACTTTGCCTAACAGGTCATTGTTGTGTAGGCCACTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGCCTTCATGGTGGAGCCTTCTATTCTCTATACACAAATGAAGGAAAGGGGCGGCAGGACCGGAAGTTGGCGGTAGCTCGTCATGGACGACGGAAAGGGAGGTCAGAGTATAAAATAGCTCAGAGTGCAAGGGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATCCATGACTACAAACCTTGTTGGTTCAAAATATTACATATGGGATCAGGGAAGCCGTCTGAAACCGATCCCAACCCAGTCGAGATCGCTTCTGGGTGCTGTAACATTCACGCCTACAATAACCACTTGGACAGGCAGCCATAGGAGCATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGCAGGTGCAGCACATAGCAGGGCTTCCAAGGGAATGGGAGGAAGAAAAGGCCAAAGTTCACCAGCTTGTTTCCAAGGTTCCCCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTTAGAGACAGAGGAAGGGCAGTTTCAGGTCTTGTGATCCAAACCTCCGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGTAAACAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAATATGTGATGGATTATAGATATCCACTGACAGGTTATCAAGCCTTCTGTATATGTTTGGCTTCCATAGATTCAAAGCTGTGTTGTTCAGTATGA 1230 44.31 MIGDKKSIIPRQSSYNSLYLNPLTDLRHNRSCSDGGGFRQGKENLTPNTKDKQRDEPAPAVLCDKENVIPANGFCANSKQQFGDFKSFSNGKALKPSSLHLCMQMNEPDKVFASRLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHGRRKGRSEYKIAQSARGILCNADDSFVGSMTTNLVGSKYYIWDQGSRLKPIPTQSRSLLGAVTFTPTITTWTGSHRSMKAFIPKHQSMQLKNTNQQVQHIAGLPREWEEEKAKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLVIQTSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV* 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20108075 20112107 - CsaV3_7G031740.1 Csa07g02085 537648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02085 409 Pfam Tub family 154 403 IPR000007 -
Csa07g02085 409 PANTHER TUBBY-RELATED 1 407 - -
Csa07g02085 409 SUPERFAMILY Tubby C-terminal domain-like 141 407 IPR025659 -
Csa07g02085 409 PRINTS Tubby superfamily signature 229 253 IPR000007 -
Csa07g02085 409 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Csa07g02085 409 PRINTS Tubby superfamily signature 365 384 IPR000007 -
Csa07g02085 409 PRINTS Tubby superfamily signature 386 408 IPR000007 -
Csa07g02085 409 MobiDBLite consensus disorder prediction 31 57 - -
Csa07g02085 409 PANTHER TUBBY-LIKE PROTEIN 8 1 407 - -
Csa07g02085 409 Gene3D Tubby Protein; Chain A 149 402 IPR025659 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03246 Csa-Chr6:27387767 Csa07g02085 Csa-Chr7:20108075 2.02E-14 dispersed
Csa07g02085 Csa-Chr7:20108075 Csa03g01411 Csa-Chr3:10605878 5.13E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32369 PF01167 Tub 5.10E-45 CL0395 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02085 K19600 - csv:101216780 833.172