Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02087 ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTCCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCCATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTATTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCGAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGGGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAAGCAAGGAGGCTTGCTTCGTTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAGCGGAAGAGAAAGCGTAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAACCTCCTCCAGGATTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAATCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTCGCTGGTAATGAAGAGCTTGCAGAGGGAAGCGGTGCTACACGAGCGCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCAGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAGAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCACGGAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGACTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGCTGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTAGTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAACGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTATCCAATCGACGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCTAATGCAGTCATCCCCACAATAGATGATTTCGAAGATACTGAGATGGAGGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAATTACCCGCCTTGCAGGATGAATTTGAGTATGTCAAAAAGAAAATGGATGAGGATACTGAGAAAGCTGTCCGGTTAGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACCTTCAAGCAGATAGACACTGCAGCTACAGAGCTTGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAAAGAACTCTTCAGTTACGTTATGGAAAATTTTTAGAGGACTTGGAAAAGATGCAGAAAATTATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGATATCGCTGCGGAGAGTCGCACTCTTCAGTTGGCTGGGGCTGAGGCTAACCAAACAGTTGGAGAAAATGCTGATAGTTCCGAAGTCATGTCTGCATTAGTAGCAGCAGTCAATTGTGAAAATTCAGTGCCTGTTACCACCTCCATTGAAATAATAGGTGAACAACCGAACTCGTCAGTGGGACATGAACATGAAACTAATAATGCTGTGGATATCGACACTGAAAAAGGAAGTGTAGCAGTGAATTTGGATATTGGTTTATCTGATAACAACCTACCTTCTGCAGTGGGAGGTCCACCACTGCCTGACAGTGGCTTTGAAGAGTCTGTTAAAAGTCAAACGATCGATGTTCCTTCTCAAGAACTCTTGGGCCCTGCTGCAAATGCCACTTCAGATTCTGTTGATGGTGCAGCTATTCAAAATTCTAAATGCAGTACTGATATTGTTGAGGAAGTCAAAGATGTCGAAACTCAGCAGCCTGTGATTGAAACTGAAAAGAACTCAGATGTGTGTTCGATTAATCTGGATGCAGCGGCACCTGCATCTTCTTATGAGGATGGCCCTGTAAATGATGGCAATGGGGAAATTCCTCATGACGAAGAAATATTTTATTCAAGCTTCTTATGGAAGAGTATTGATGACATTATACCGTTGGCAGGGCTTACAGATGCAAATAAGGAGGTTCTAGCTTTGGTTATCAAAGCTGCGGCAATGATAGATAAAATATTCCACCTGCAGGTTTGGTACAGTAATCCATGTTTAAGAGATTGGTTGGAGAAGAGTGCTGCTCTATCAGAGTTAGACGAATTGAAGTGGGCCTATTATAGGATTAATAAGACTCCGTGGTCTTCCCTCGATGAAAATGAGGCATATCTGACTACTGCTGATTCGGCAATAATTTTGGTTCCTGAAGCCACTAGGCAAGTTAGGGGGTGGAAGGGCCTGGAATATAAAGCTGCATTTCCATCAAAGATACCTCCTGGTGCAAACTTCTACCCTCCAGACATGAACAAGATGGAATTTGAATTATGGAAGAACAGTCTGACAGAGGATCAGCAAAGCTTTGTTACAGGATTCTTCAGTGTCATCAAAAGACGCAGTGAATATAATTTAGATTTGTCTATTTGCAAGGGTGGTTTTGATAGCACAAATCACATGGAGGGTTCTACTTATGATTTGTATGGCATACCTTTTTCCCAAGAATATAGTTCTTTCCTATCAAAAGCTGCTGAGTTATTGCATAAAGCAGGGGATATAACTAGCTCTCCCAGTTTGAAGAGGTTTTTGCATACCAAGGCCAGTGCCTTCCTCTCAAACGATTACTATGAATCAGATATAGCATGGATGGAATTGGACTCAGAGTTGGATATTACCATTGGTCCGTATGAGACTTATGAAGATTCAATTTTTGGGTATAAGGCTACATTTGAAGCTTTCATTGCAATTCGGGATGAGAAAGGAACTGCTCAAGTAAAATTGTTTGGGGATAATATGCAGGTATTGGAACAAAATCTCCCTATGGACGATGCATACAAATCAAAAGATGTTAGTGCTGCTCCAATCCGTGTTGTTCAGCTTGTCTATAATGCTGGGGATGTTAAGGGTCCTCAGATTGTTGCTTTCAACTTGCCCAACGACGAGCGAATTGTGAAAGACCGAGGAACATCAATGGTTATGCTTAAGAATGTTTCAGAGGCCAAGTTCAAGCATATTCTTCAGCCTATTGCCAATGCCTGTATTACGAATGAGCAACGTGAGTTTGTGGATTTCGATTCTTATTTTACTCATGTAATTTGCCATGAGTGTTGCCATGGCATTGGACCTCATACCATAACACTACCGGATGGTAAAGAAACTACCGTGAGATTGAAACTGCAAGAACTCCACTCGGCTTTGGAGGAGGCAAAAGCTGACACGGTAGGCCTTTGGGCACTGAGGTTCCTTACCCTCCAGGGCTTGCTACCAGGAATGTCATTGAAGTCCGTGTATACTACTATCCTTGCAGGATGTTTCCGGTCAGTACGTTTCGGTTTATCAGAGGCTCATGGAAAGGGACAGGCGTTGCTGTTCAATTGGCTATATGAGAAAAAAGCCTTCATTTTCAATGCAGATGAAACTTTTTCTGTTGATTTTGACAAGGTGGAAGATGCAGTTGAAAGCCTGAGTAGGGAAATACTCACCATACAGGCAAAAGGTGACAAGGAGTCAGCAAATTTGCTTCTTCAGAAATACGGTGTTATGTCAGAACCATTGAAAGTAGCATTGCAAAATTTAGAACGAATCCAGGTACCTGTGGATATAGCTCCTGAGTTTCCGATTGCCAAAGAAGTATTGCCAGAGAGGTCTTTTTGCTGA 4806 43.09 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACIKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEELIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPSASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRTELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPNAVIPTIDDFEDTEMEEADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLPALQDEFEYVKKKMDEDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGKFLEDLEKMQKIMVDRKAQAQKEEDIAAESRTLQLAGAEANQTVGENADSSEVMSALVAAVNCENSVPVTTSIEIIGEQPNSSVGHEHETNNAVDIDTEKGSVAVNLDIGLSDNNLPSAVGGPPLPDSGFEESVKSQTIDVPSQELLGPAANATSDSVDGAAIQNSKCSTDIVEEVKDVETQQPVIETEKNSDVCSINLDAAAPASSYEDGPVNDGNGEIPHDEEIFYSSFLWKSIDDIIPLAGLTDANKEVLALVIKAAAMIDKIFHLQVWYSNPCLRDWLEKSAALSELDELKWAYYRINKTPWSSLDENEAYLTTADSAIILVPEATRQVRGWKGLEYKAAFPSKIPPGANFYPPDMNKMEFELWKNSLTEDQQSFVTGFFSVIKRRSEYNLDLSICKGGFDSTNHMEGSTYDLYGIPFSQEYSSFLSKAAELLHKAGDITSSPSLKRFLHTKASAFLSNDYYESDIAWMELDSELDITIGPYETYEDSIFGYKATFEAFIAIRDEKGTAQVKLFGDNMQVLEQNLPMDDAYKSKDVSAAPIRVVQLVYNAGDVKGPQIVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKHILQPIANACITNEQREFVDFDSYFTHVICHECCHGIGPHTITLPDGKETTVRLKLQELHSALEEAKADTVGLWALRFLTLQGLLPGMSLKSVYTTILAGCFRSVRFGLSEAHGKGQALLFNWLYEKKAFIFNADETFSVDFDKVEDAVESLSREILTIQAKGDKESANLLLQKYGVMSEPLKVALQNLERIQVPVDIAPEFPIAKEVLPERSFC* 1602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20118421 20129715 - CsaV3_7G031760.1 Csa07g02087 537650

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02087 1601 MobiDBLite consensus disorder prediction 157 176 - -
Csa07g02087 1601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Csa07g02087 1601 Coils Coil 796 816 - -
Csa07g02087 1601 Coils Coil 1528 1548 - -
Csa07g02087 1601 Coils Coil 167 187 - -
Csa07g02087 1601 SMART sant 58 105 IPR001005 -
Csa07g02087 1601 SMART sant 6 55 IPR001005 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 113 150 - -
Csa07g02087 1601 PANTHER NUDIX HYDROLASE 3 93 1598 - -
Csa07g02087 1601 Gene3D - 5 56 - -
Csa07g02087 1601 Gene3D - 57 113 - -
Csa07g02087 1601 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Csa07g02087 1601 PANTHER DIPEPTIDYL PEPTIDASE III-RELATED 93 1598 IPR039461 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 400 414 - -
Csa07g02087 1601 CDD SANT 10 53 IPR001005 -
Csa07g02087 1601 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Csa07g02087 1601 CDD SANT_CDC5_II 55 106 - -
Csa07g02087 1601 Pfam Peptidase family M49 1217 1424 IPR039461 -
Csa07g02087 1601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Csa07g02087 1601 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 382 421 - -
Csa07g02087 1601 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Csa07g02087 1601 Gene3D - 1199 1387 - -
Csa07g02087 1601 Pfam Myb-like DNA-binding domain 10 70 - -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 599 623 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02087 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1955.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03416 Csa-Chr1:31108503 Csa07g02087 Csa-Chr7:20118421 3.02E-117 dispersed
Csa01g03417 Csa-Chr1:31111936 Csa07g02087 Csa-Chr7:20118421 1.57E-58 dispersed
Csa01g03418 Csa-Chr1:31122239 Csa07g02087 Csa-Chr7:20118421 1.86E-119 dispersed
Csa01g03419 Csa-Chr1:31122926 Csa07g02087 Csa-Chr7:20118421 0 dispersed
Csa07g02087 Csa-Chr7:20118421 Csa07g02089 Csa-Chr7:20156250 0 dispersed
Csa07g02087 Csa-Chr7:20118421 Csa07g02088 Csa-Chr7:20129767 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g938 . Blo06g00640 . Bda10g00764 . Bpe10g00588 . . . . . . . . . Cpe12g00783 . . . . . . . . . . . . . . . . . . . Lsi02g02651 Csa07g02087 . Cme01g02539 . . . . . . . . Sed09g1406 . . . . . Car17g00858 . . Bhi09g00545 Tan06g0482 Cmetu01g2255 . . . . Cla09g00309 Cam09g0339 Cec09g0341 Cco09g0329 Clacu09g0344 . Cre09g0325 . . Chy01g01933 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa03g00670 . 160 612 MYB-Related Transcription Factor Family AT3G18100 57.1 2.1e-148 523.1
Csa07g02087 . 1 849 MYB-Related Transcription Factor Family AT1G09770 75.6 0.0e+00 1204.9
Csa01g03419 . 1 361 MYB-Related Transcription Factor Family AT1G09770 90.9 4.2e-183 638.6
Csa01g03418 . 1 184 MYB-Related Transcription Factor Family AT1G09770 75.0 2.8e-65 247.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32370 PF03571 Peptidase_M49 1.90E-10 CL0126 Csa TF