Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02087 ATGAGGATTATGATCAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGCAAAAACCAGTGGGCTCGAATTTCCTCGCTCCTTGTTAGGAAATCTGCTAAGCAGTGCAAGGCTCGATGGTATGAGTGGCTTGACCCCTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCCATTGTTGGACGTACTCCATCCCAGTGTCTCGAGCGGTATGAGAAGCTTCTTGATGCTGCTTGTATTAAGGATGACAATTACGAACCAGGAGATGACCCAAGAAAATTGCGCCCTGGAGAAATTGACCCGAACCCAGAATCAAAGCCTGCACGTCCCGATCCTGTTGACATGGACGAAGATGAAAAGGAAATGCTTTCTGAAGCACGGGCAAGATTAGCAAATACTAGGGGAAAGAAGGCAAAAAGGAAAGCCCGAGAGAAACAACTTGAAGAAGCAAGGAGGCTTGCTTCGTTACAAAAAAGAAGAGAGCTAAAAGCTGCAGGGATTGATACTCGACAGCGGAAGAGAAAGCGTAAAGGAATAGATTACAATGCTGAAATTCCTTTTGAGAAAAAACCTCCTCCAGGATTTTTTGATGTTGGTGAGGAAGATAGACCAGTGGAACAGCCCAAGTTTCCAACAACAATTGAAGAACTTGAAGGAAAAAGAAGGATTGATGTAGAATCCCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGCGGAAAAGATCTAAACTTATGCTGCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCAAGTGATCTTCTCGCTGGTAATGAAGAGCTTGCAGAGGGAAGCGGTGCTACACGAGCGCTGCTTGCAAATTATGCACAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAAAGGACGCCGGCAGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGAGTCACCCCAAGGAAGAAGGAGATTCAAACACCAAATCCTATGTTAACACCCTCAGCAACTCCTGGTGGTGTTGGTCTCACTCCACGGAGTGGCATGACACCAGCTAGGGATGCTTACTCATTTGGCATGACTCCAAAAGGTACACCTATTAGAGATGAGTTACGTATCAATGAAGATATGGATGCACATGATAGTGCAAAACTGGAGTCTCAAAGACAAGCTGACTTGAGAAGGAATCTTAGCCTAGGATTAGGAAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCTGAGGAGCTGATTGAAGAGGACATGTCTGATAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTAGGAAAAGATCAAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTAGTGCTTCTTTGGAACTTATTAGAAATTCTTTGATGAGAGCTGATGGAGACAAGAGTTCATTTGTTCCACCTACCCCTATTGAGCAAGCTGATGAAATGATAAGAACGGAACTTCTTGCTTTGTTAGAGCATGATAATGCAAAGTATCCAATCGACGAAAAGGTCAACAAGGAGAAAAAGAAGGGTTCCAAGCGCACTGGAAATGGACCTAATGCAGTCATCCCCACAATAGATGATTTCGAAGATACTGAGATGGAGGAGGCTGATTATTTGATAAAGGAAGAGGCTCGGTATCTGTGTGTTGCAATGGGGCATGAAAATGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGGAATGCTTATGGACTTTCGAGCGTTGCTGGAAACCATGAGAAATTACCCGCCTTGCAGGATGAATTTGAGTATGTCAAAAAGAAAATGGATGAGGATACTGAGAAAGCTGTCCGGTTAGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGGCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACCTTCAAGCAGATAGACACTGCAGCTACAGAGCTTGAGTGCTTTGAAGCTCTTCAAAAGCAAGAGATGTCAGCTGCTTCACACAGGATTAGTGGTATCTGGGAGGAGGTTCAAAAACAAAAAGAGCTGGAAAGAACTCTTCAGTTACGTTATGGAAAATTTTTAGAGGACTTGGAAAAGATGCAGAAAATTATGGTTGATCGCAAGGCACAGGCACAAAAGGAAGAAGATATCGCTGCGGAGAGTCGCACTCTTCAGTTGGCTGGGGCTGAGGCTAACCAAACAGTTGGAGAAAATGCTGATAGTTCCGAAGTCATGTCTGCATTAGTAGCAGCAGTCAATTGTGAAAATTCAGTGCCTGTTACCACCTCCATTGAAATAATAGGTGAACAACCGAACTCGTCAGTGGGACATGAACATGAAACTAATAATGCTGTGGATATCGACACTGAAAAAGGAAGTGTAGCAGTGAATTTGGATATTGGTTTATCTGATAACAACCTACCTTCTGCAGTGGGAGGTCCACCACTGCCTGACAGTGGCTTTGAAGAGTCTGTTAAAAGTCAAACGATCGATGTTCCTTCTCAAGAACTCTTGGGCCCTGCTGCAAATGCCACTTCAGATTCTGTTGATGGTGCAGCTATTCAAAATTCTAAATGCAGTACTGATATTGTTGAGGAAGTCAAAGATGTCGAAACTCAGCAGCCTGTGATTGAAACTGAAAAGAACTCAGATGTGTGTTCGATTAATCTGGATGCAGCGGCACCTGCATCTTCTTATGAGGATGGCCCTGTAAATGATGGCAATGGGGAAATTCCTCATGACGAAGAAATATTTTATTCAAGCTTCTTATGGAAGAGTATTGATGACATTATACCGTTGGCAGGGCTTACAGATGCAAATAAGGAGGTTCTAGCTTTGGTTATCAAAGCTGCGGCAATGATAGATAAAATATTCCACCTGCAGGTTTGGTACAGTAATCCATGTTTAAGAGATTGGTTGGAGAAGAGTGCTGCTCTATCAGAGTTAGACGAATTGAAGTGGGCCTATTATAGGATTAATAAGACTCCGTGGTCTTCCCTCGATGAAAATGAGGCATATCTGACTACTGCTGATTCGGCAATAATTTTGGTTCCTGAAGCCACTAGGCAAGTTAGGGGGTGGAAGGGCCTGGAATATAAAGCTGCATTTCCATCAAAGATACCTCCTGGTGCAAACTTCTACCCTCCAGACATGAACAAGATGGAATTTGAATTATGGAAGAACAGTCTGACAGAGGATCAGCAAAGCTTTGTTACAGGATTCTTCAGTGTCATCAAAAGACGCAGTGAATATAATTTAGATTTGTCTATTTGCAAGGGTGGTTTTGATAGCACAAATCACATGGAGGGTTCTACTTATGATTTGTATGGCATACCTTTTTCCCAAGAATATAGTTCTTTCCTATCAAAAGCTGCTGAGTTATTGCATAAAGCAGGGGATATAACTAGCTCTCCCAGTTTGAAGAGGTTTTTGCATACCAAGGCCAGTGCCTTCCTCTCAAACGATTACTATGAATCAGATATAGCATGGATGGAATTGGACTCAGAGTTGGATATTACCATTGGTCCGTATGAGACTTATGAAGATTCAATTTTTGGGTATAAGGCTACATTTGAAGCTTTCATTGCAATTCGGGATGAGAAAGGAACTGCTCAAGTAAAATTGTTTGGGGATAATATGCAGGTATTGGAACAAAATCTCCCTATGGACGATGCATACAAATCAAAAGATGTTAGTGCTGCTCCAATCCGTGTTGTTCAGCTTGTCTATAATGCTGGGGATGTTAAGGGTCCTCAGATTGTTGCTTTCAACTTGCCCAACGACGAGCGAATTGTGAAAGACCGAGGAACATCAATGGTTATGCTTAAGAATGTTTCAGAGGCCAAGTTCAAGCATATTCTTCAGCCTATTGCCAATGCCTGTATTACGAATGAGCAACGTGAGTTTGTGGATTTCGATTCTTATTTTACTCATGTAATTTGCCATGAGTGTTGCCATGGCATTGGACCTCATACCATAACACTACCGGATGGTAAAGAAACTACCGTGAGATTGAAACTGCAAGAACTCCACTCGGCTTTGGAGGAGGCAAAAGCTGACACGGTAGGCCTTTGGGCACTGAGGTTCCTTACCCTCCAGGGCTTGCTACCAGGAATGTCATTGAAGTCCGTGTATACTACTATCCTTGCAGGATGTTTCCGGTCAGTACGTTTCGGTTTATCAGAGGCTCATGGAAAGGGACAGGCGTTGCTGTTCAATTGGCTATATGAGAAAAAAGCCTTCATTTTCAATGCAGATGAAACTTTTTCTGTTGATTTTGACAAGGTGGAAGATGCAGTTGAAAGCCTGAGTAGGGAAATACTCACCATACAGGCAAAAGGTGACAAGGAGTCAGCAAATTTGCTTCTTCAGAAATACGGTGTTATGTCAGAACCATTGAAAGTAGCATTGCAAAATTTAGAACGAATCCAGGTACCTGTGGATATAGCTCCTGAGTTTCCGATTGCCAAAGAAGTATTGCCAGAGAGGTCTTTTTGCTGA 4806 43.09 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACIKDDNYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRQRKRKRKGIDYNAEIPFEKKPPPGFFDVGEEDRPVEQPKFPTTIEELEGKRRIDVESQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYASDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELRINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEELIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPSASLELIRNSLMRADGDKSSFVPPTPIEQADEMIRTELLALLEHDNAKYPIDEKVNKEKKKGSKRTGNGPNAVIPTIDDFEDTEMEEADYLIKEEARYLCVAMGHENESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLPALQDEFEYVKKKMDEDTEKAVRLEKKVKVLTHGYETRAKQSLWPQIEATFKQIDTAATELECFEALQKQEMSAASHRISGIWEEVQKQKELERTLQLRYGKFLEDLEKMQKIMVDRKAQAQKEEDIAAESRTLQLAGAEANQTVGENADSSEVMSALVAAVNCENSVPVTTSIEIIGEQPNSSVGHEHETNNAVDIDTEKGSVAVNLDIGLSDNNLPSAVGGPPLPDSGFEESVKSQTIDVPSQELLGPAANATSDSVDGAAIQNSKCSTDIVEEVKDVETQQPVIETEKNSDVCSINLDAAAPASSYEDGPVNDGNGEIPHDEEIFYSSFLWKSIDDIIPLAGLTDANKEVLALVIKAAAMIDKIFHLQVWYSNPCLRDWLEKSAALSELDELKWAYYRINKTPWSSLDENEAYLTTADSAIILVPEATRQVRGWKGLEYKAAFPSKIPPGANFYPPDMNKMEFELWKNSLTEDQQSFVTGFFSVIKRRSEYNLDLSICKGGFDSTNHMEGSTYDLYGIPFSQEYSSFLSKAAELLHKAGDITSSPSLKRFLHTKASAFLSNDYYESDIAWMELDSELDITIGPYETYEDSIFGYKATFEAFIAIRDEKGTAQVKLFGDNMQVLEQNLPMDDAYKSKDVSAAPIRVVQLVYNAGDVKGPQIVAFNLPNDERIVKDRGTSMVMLKNVSEAKFKHILQPIANACITNEQREFVDFDSYFTHVICHECCHGIGPHTITLPDGKETTVRLKLQELHSALEEAKADTVGLWALRFLTLQGLLPGMSLKSVYTTILAGCFRSVRFGLSEAHGKGQALLFNWLYEKKAFIFNADETFSVDFDKVEDAVESLSREILTIQAKGDKESANLLLQKYGVMSEPLKVALQNLERIQVPVDIAPEFPIAKEVLPERSFC* 1602
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20118421 20129715 - CsaV3_7G031760.1 Csa07g02087 537650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02087 1601 MobiDBLite consensus disorder prediction 157 176 - -
Csa07g02087 1601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Csa07g02087 1601 Coils Coil 796 816 - -
Csa07g02087 1601 Coils Coil 1528 1548 - -
Csa07g02087 1601 Coils Coil 167 187 - -
Csa07g02087 1601 SMART sant 58 105 IPR001005 -
Csa07g02087 1601 SMART sant 6 55 IPR001005 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 113 150 - -
Csa07g02087 1601 PANTHER NUDIX HYDROLASE 3 93 1598 - -
Csa07g02087 1601 Gene3D - 5 56 - -
Csa07g02087 1601 Gene3D - 57 113 - -
Csa07g02087 1601 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Csa07g02087 1601 PANTHER DIPEPTIDYL PEPTIDASE III-RELATED 93 1598 IPR039461 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 400 414 - -
Csa07g02087 1601 CDD SANT 10 53 IPR001005 -
Csa07g02087 1601 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
Csa07g02087 1601 CDD SANT_CDC5_II 55 106 - -
Csa07g02087 1601 Pfam Peptidase family M49 1217 1424 IPR039461 -
Csa07g02087 1601 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Csa07g02087 1601 SUPERFAMILY Homeodomain-like 33 106 IPR009057 -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 382 421 - -
Csa07g02087 1601 Pfam pre-mRNA splicing factor component 407 658 IPR021786 -
Csa07g02087 1601 Gene3D - 1199 1387 - -
Csa07g02087 1601 Pfam Myb-like DNA-binding domain 10 70 - -
Csa07g02087 1601 MobiDBLite consensus disorder prediction 599 623 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g03416 Csa-Chr1:31108503 Csa07g02087 Csa-Chr7:20118421 3.02E-117 dispersed
Csa01g03417 Csa-Chr1:31111936 Csa07g02087 Csa-Chr7:20118421 1.57E-58 dispersed
Csa01g03418 Csa-Chr1:31122239 Csa07g02087 Csa-Chr7:20118421 1.86E-119 dispersed
Csa01g03419 Csa-Chr1:31122926 Csa07g02087 Csa-Chr7:20118421 0 dispersed
Csa07g02087 Csa-Chr7:20118421 Csa07g02089 Csa-Chr7:20156250 0 dispersed
Csa07g02087 Csa-Chr7:20118421 Csa07g02088 Csa-Chr7:20129767 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32370 PF03571 Peptidase_M49 1.90E-10 CL0126 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02087 K12860 - csv:101206265 1955.64