Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02095 ATGGGGATATATCTCAGCTCCCCCAAAACAGAAAAGGCCTCAGATGATGGTGAGAATGACAGACTTCGATACGGTCTATCCTCTATGCAAGGGTGGCGTGCAACCATGGAAGATGCTCATGCAGCCTGTCTAGATTTGGATACATCAACATCTTTCTTCGGTGTTTACGACGGTCATGGAGGTAAAGCAGTTTCAAAGTTCTGTGCCAAGTATCTTCACCGACAGGTGCTCAAGCATGAATCATACATGGCTGGAGATCTGGGAACTTCTCTGCAGAAGGCCTTTCTCAGAATGGATGAGATGATGCGTGGACAAAGAGGATGGAGAGAATTAGCTATTTTAGGAGACAAAATGGACAAAATTTCTGGTATGATAGAAGGATTTATATGGTCGCCCAAGGGCAATGAAGCTAACAACCAAGTGGATGATTGGCCTCCGGAGGAGGGACCTCACTCTGACTTTCATGGACCAAATGCTGGAAGTACAGCTTGTGTTGCGATCATACGAAATAACCAACTTGTGGTGGCCAATGCTGGCGATTCTCGCTGTGTCATTTCCAGAAAGGGTCAGGCATATAATCTATCTAAAGATCACAAGCCTGATCTTGAGGTTGAGAAGGACAGAATTCTGAAAGCTGGTGGTTTCATCCGAGTTGGTCGAGTCAATGGCAGTCTCAACTTGGCACGGGCTATAGGAGACATGGAATTTAAGCAGAATAAAAGTATGCCCGCAGAAAAACAGATTGTAACTGCCAATCCAGATATAACAACTGTTGAGCTTTGTGAGGATGACGAATTTCTTGTTCTTGCCTGTGATGGGATCTGGGATTGCATGTCCAGCCAACAACTGGTTGACTACATTGGAGATCAACTAAAATCGGAAAGTAGACTCTCAGTTATTTGTGAGAGAGTATTTGACAGGTGCTTGGCACCCACAGCTGGTGGTGAAGGATGTGACAACATGACTATGATCTTGGTTCAGTTCAAGAAACCCTTCAGCAACCCGGAAAACCTGAATGCTGCTTCCACTTCTGCTGAGGAGCCACCTTCATCGTTCAATCAAACGACGTCTGATCCGAGTGAAAGCGCTTCTAAGACTGAATAG 1104 45.38 MGIYLSSPKTEKASDDGENDRLRYGLSSMQGWRATMEDAHAACLDLDTSTSFFGVYDGHGGKAVSKFCAKYLHRQVLKHESYMAGDLGTSLQKAFLRMDEMMRGQRGWRELAILGDKMDKISGMIEGFIWSPKGNEANNQVDDWPPEEGPHSDFHGPNAGSTACVAIIRNNQLVVANAGDSRCVISRKGQAYNLSKDHKPDLEVEKDRILKAGGFIRVGRVNGSLNLARAIGDMEFKQNKSMPAEKQIVTANPDITTVELCEDDEFLVLACDGIWDCMSSQQLVDYIGDQLKSESRLSVICERVFDRCLAPTAGGEGCDNMTMILVQFKKPFSNPENLNAASTSAEEPPSSFNQTTSDPSESASKTE* 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20212401 20218250 + CsaV3_7G031840.1 Csa07g02095 537658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02095 367 Pfam Protein phosphatase 2C 157 313 IPR001932 -
Csa07g02095 367 Pfam Protein phosphatase 2C 23 104 IPR001932 -
Csa07g02095 367 SMART PP2C_SIG_2 28 328 IPR001932 -
Csa07g02095 367 Gene3D - 1 329 IPR036457 -
Csa07g02095 367 SUPERFAMILY PP2C-like 3 329 IPR036457 -
Csa07g02095 367 CDD PP2Cc 23 328 IPR001932 -
Csa07g02095 367 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Csa07g02095 367 PANTHER PROTEIN PHOSPHATASE 2C 1 341 IPR015655 GO:0004722|GO:0006470
Csa07g02095 367 SMART PP2C_4 13 326 IPR001932 -
Csa07g02095 367 MobiDBLite consensus disorder prediction 336 367 - -
Csa07g02095 367 ProSiteProfiles PPM-type phosphatase domain profile. 23 328 IPR001932 -
Csa07g02095 367 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 341 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02621 Csa-Chr4:25646974 Csa07g02095 Csa-Chr7:20212401 0 dispersed
Csa07g02095 Csa-Chr7:20212401 Csa02g00258 Csa-Chr2:1753627 5.39E-38 dispersed
Csa07g02095 Csa-Chr7:20212401 Csa03g02203 Csa-Chr3:19119262 4.91E-36 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02095 K17499 - csv:101214132 747.658