Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02102 ATGCCAGTCGATACTCCTTCATCTCACTCCTCCACCGTCTGCGTCACCGGCGCCGGTGGCTTCATTGCCTCTTGGATCGTCAAACTCCTCCTCCACAAAGGCTATTTCGTAAGAGGAACCCTCAGAAATCCAGAGGATCCGAAGAACGGGCATTTGAGAGAACTGGAAGGTGCGGAGGAGCGGTTGAGTTTGTATAAAGCGGATCTTCTTGATTTGGAAAGCCTTAAAGCGGCGATTGACGGGTGCGATGGCGTTTTCCATACGGCGTCGCCTGTGACTGACGATCCGGAGCAAATGGTGGAACCGGCGGTCAACGGCACAAAGAACGTCATAATCGCGGCGGCCGAAGCCAATGTCCGTCGCGTCGTGTTCACTTCCTCCATCGGTGCAGTCTATATGGACCCTAACCGTGGTCCAGACGACATCGTAGACGAGTCCTGTTGGAGCGATCTCGAGTTCTGCAAGAACACAAAGAATTGGTATTGTTATGGTAAAGCTGTGGCGGAGCAGGCGGCATGGGAGGTTGCAAAGGAGAAGGGGGTGGATTTGGTGGTGGTGAATCCAGTTCTGGTTCTAGGGCCATTGTTGCAATCCACCATTAATGCGAGCATAATTCATATACTGAAATACTTGACTGGATCGGCTAAGACTTACGCCAATTCCGTTCAGGCATATGTGCATGTGAAGGATGTGGCTCTAGCTCATATCCTTGTGTACGAGACTCCCTCCGCCGCCGGCCGGTACCTGTGCGCCGAGAGTGTGCTTCATAGAGGGGAGGTTGTTGAGATTCTGGCCAAATTGTTCCCAGAATATCCCGTTCCTACCAAATGCTCAGATGAAGTGAACCCAAGGAAGAAAGCATACAAGTTCTCAAACAAGAAGCTGAAGGAGTTGGGATTGGAGTTCACTCCAGCAAAGCAGTGTCTATACGACACCGTTAAAAGTTTACAAGAGAAAGGTCACCTCCCAATTCCCACTTCTACTCAACCACCAGATTCCATTCAAATTCAATCTTGA 1017 50.54 MPVDTPSSHSSTVCVTGAGGFIASWIVKLLLHKGYFVRGTLRNPEDPKNGHLRELEGAEERLSLYKADLLDLESLKAAIDGCDGVFHTASPVTDDPEQMVEPAVNGTKNVIIAAAEANVRRVVFTSSIGAVYMDPNRGPDDIVDESCWSDLEFCKNTKNWYCYGKAVAEQAAWEVAKEKGVDLVVVNPVLVLGPLLQSTINASIIHILKYLTGSAKTYANSVQAYVHVKDVALAHILVYETPSAAGRYLCAESVLHRGEVVEILAKLFPEYPVPTKCSDEVNPRKKAYKFSNKKLKELGLEFTPAKQCLYDTVKSLQEKGHLPIPTSTQPPDSIQIQS* 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20253590 20257987 - CsaV3_7G031910.1 Csa07g02102 537665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02102 338 Pfam NAD dependent epimerase/dehydratase family 13 244 IPR001509 -
Csa07g02102 338 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 7 326 - -
Csa07g02102 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 317 IPR036291 -
Csa07g02102 338 Gene3D - 4 337 - -
Csa07g02102 338 Coils Coil 48 75 - -
Csa07g02102 338 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 7 326 - -
Csa07g02102 338 CDD FR_SDR_e 13 300 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02979 Csa-Chr3:28400056 Csa07g02102 Csa-Chr7:20253590 0 dispersed
Csa03g02980 Csa-Chr3:28404767 Csa07g02102 Csa-Chr7:20253590 0 dispersed
Csa04g02741 Csa-Chr4:26310401 Csa07g02102 Csa-Chr7:20253590 5.59E-86 dispersed
Csa06g02545 Csa-Chr6:22585915 Csa07g02102 Csa-Chr7:20253590 1.65E-87 dispersed
Csa04g02737 Csa-Chr4:26293322 Csa07g02102 Csa-Chr7:20253590 2.93E-06 transposed
Csa03g02977 Csa-Chr3:28388659 Csa07g02102 Csa-Chr7:20253590 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02102 K09753 - csv:101213412 671.774