Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02109 ATGGCTCGTCCACAACAACGCTATCGTGGCGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTATTGAAGACGAGAATATGGTTAGGAACGTTTGAGACGGCAGAGGATGCAGCTCGAGCTTATGACGAGGCAGCACGGTTGATGTGCGGTCCAAAAGCACGAACCAACTTTCCATACAATCCGAACGACCAACAGTCGTCGTCGTCATTCTCCTCCTCCTCCAAGCTTCTCTCTGCCGCATTGATAGAGAAATTACATAAATGTCACTTAGCTTCACTCCAAATTGCAAAACAACACGTCCACAAACAACATGCTGGATTCGAGCCGAGCTACCTCGCATACAGTGGATCACCTCCACCGATCATTACCGGAGCCACCACTAGTCAATGGGCATCAGATGAAACGTGGGTCTATTCCAACAAAGGTGATCAAATGGAGATGAATAACAATAACAATAATTATAATAACAACATTCATCATCAACAATGCCAACTTGAACCTCTTGAAGATGATCATATCGAACAAATGATACAAGAGCTGCTAGACCTCGGATCATTCGAAATTATTACATAA 591 45.35 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNDQQSSSSFSSSSKLLSAALIEKLHKCHLASLQIAKQHVHKQHAGFEPSYLAYSGSPPPIITGATTSQWASDETWVYSNKGDQMEMNNNNNNYNNNIHHQQCQLEPLEDDHIEQMIQELLDLGSFEIIT* 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20295175 20296300 + CsaV3_7G031980.1 Csa07g02109 537672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02109 196 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Csa07g02109 196 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Csa07g02109 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 195 - -
Csa07g02109 196 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Csa07g02109 196 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Csa07g02109 196 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Csa07g02109 196 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Csa07g02109 196 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Csa07g02109 196 PANTHER ETHYLENE RESPONSE FACTOR 1 195 - -
Csa07g02109 196 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa04g00174 Csa07g02109 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g00174 Csa-Chr4:1000954 Csa07g02109 Csa-Chr7:20295175 1.92E-45 dispersed
Csa07g02109 Csa-Chr7:20295175 Csa06g02395 Csa-Chr6:21412666 5.23E-25 dispersed
Csa02g02417 Csa-Chr2:21323734 Csa07g02109 Csa-Chr7:20295175 1.53E-55 wgd
Csa04g02652 Csa-Chr4:25867321 Csa07g02109 Csa-Chr7:20295175 1.44E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32372 PF00847 AP2 8.50E-12 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02109 - - csv:105436189 367.466