Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02110 ATGGGAGAGAAATTAGGAGTTTGTGCTATGAATCTTCTTCCCATGTGGGTTTTCTATTCCTTGTTTTCAATAATTGATGCCAGACCAGACCTTCCTGGTTTCTCAATTTCTTCCACTGTTTTTGCTTCTCACTCACAACCCATCTCTCTCATTGTAGCCAAAATGGAAGCTCAATCCCCAGGAGTTTCTGAGGTTAAAGTAGTTCACCATCAAGATTTGAACAAGAGAATTCTTATTGCATTGATTATTTCTTCCACTCTTCTTGGAGCTATACTGCTGTTCCTTTTGTGTTTTTGGATATATCGTCGAAAAACGTCGAACAATGATGATGGAAAGTGTCAAAAGAATTTGGAGGCTTCGAAAGGGACGGCATTAAATCCCATAATATCTAGATTTAACTCTTTGAGGTTGGCTAACTTTAAAGGTTCGGTTTCCACCATCGACTATAAATTGTTGGAAGCAGCAACTGATAACTTCAGCAAAAGCAATGTTTTGGGAGAAGGCGGTTCGGGACATGTTTACAAAGCTTGCTTCAATGATAAATTGCTGGCAGCTGTGAAGAGAATAGACAATGGAGGACTGGACGCTGAAAGAGAATTCGAGAATGAGGTGAATTGGTTGAGTAAAATACGACATCAAAATGTGATCAAACTCTTGGGGCACTGCATTCATGGCGAGACACGGTTTCTCGTTTATGAGATGATGCAGAATGGATCTTTGGAGTCTCAATTGCACGGACCATCTCACGGATCAGCTTTAACATGGCATATTCGGATGAAGATTGCTGTTGATGTTGCGAGAGGCTTGGAATATCTTCACGAGCATCGGAATCCTCCTGTTGTCCATCGGGATTTGAAGTCGTCGAATATTCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCGGGAACTTTAGGTTACGTCGCCCCAGAATACCTTTTAGACGGTAAACTAACAGATAAAAGTGATGTCTATGCGTTCGGAGTTGTTCTTTTGGAGCTTTTGACTGGGAAAATGCCCGTCGAGAAGATGGGACCTACTCAATCTCAATCTCTAGTTTCATGGGCAATCCCACAGCTCAGTGACAGATCAAAGCTACCGAAAATTGTCGATCCCGTGATAAGGGACACAATGGATTTGAAGCACTTATACCAAGTGGCTGCTGTAGCTGTTCTATGTGTACAATCAGAACCAAGCTATCGACCATTAGTTACCGACGTTTTACATTCCCTCATCCCTCTCGTACCCGTAGAGCTCGGAGGATCTCTAAGAATGACAGAGCCTCTGCATCCAAAAGTGCCTCCATCAACCAGCTAA 1368 42.25 MGEKLGVCAMNLLPMWVFYSLFSIIDARPDLPGFSISSTVFASHSQPISLIVAKMEAQSPGVSEVKVVHHQDLNKRILIALIISSTLLGAILLFLLCFWIYRRKTSNNDDGKCQKNLEASKGTALNPIISRFNSLRLANFKGSVSTIDYKLLEAATDNFSKSNVLGEGGSGHVYKACFNDKLLAAVKRIDNGGLDAEREFENEVNWLSKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHIRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKMPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIRDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRMTEPLHPKVPPSTS* 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20302074 20305467 - CsaV3_7G031990.1 Csa07g02110 537673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02110 455 ProSiteProfiles Protein kinase domain profile. 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02110 455 Gene3D Phosphorylase Kinase; domain 1 122 234 - -
Csa07g02110 455 SUPERFAMILY Protein kinase-like (PK-like) 136 428 IPR011009 -
Csa07g02110 455 SMART serkin_6 159 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02110 455 Gene3D Transferase(Phosphotransferase) domain 1 235 433 - -
Csa07g02110 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Csa07g02110 455 PANTHER OS01G0750732 PROTEIN 10 447 - -
Csa07g02110 455 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524
Csa07g02110 455 CDD STKc_IRAK 165 431 - -
Csa07g02110 455 PANTHER BNAC02G46490D PROTEIN 10 447 - -
Csa07g02110 455 Pfam Protein kinase domain 160 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02110 Csa-Chr7:20302074 Csa01g02799 Csa-Chr1:24642337 1.28E-92 dispersed
Csa02g02414 Csa-Chr2:21306138 Csa07g02110 Csa-Chr7:20302074 1.12E-177 wgd
Csa04g02655 Csa-Chr4:25873961 Csa07g02110 Csa-Chr7:20302074 3.20E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78509 PF00069 Pkinase 1.80E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02110 - - csv:101211571 885.945