Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02159 ATGGAAGGAACTTCGCTTCACGGAACGCTTCACGCCACTATCTATGAAATCGACAGGTTGCATACTGGTGGTTCATCCAATGTCTTCAGCATGTTAAGGCAAAACTTTGAGGAGGCTGTCGGAATTGGCAAAGGACAAACCAAACTGTATGCCACTATAGATTTAGAAAAGGCTAGGGTTGGGAGGACACGAATATTGGAATCTGATCCTTCTAATCCAAAATGGAATGAATCTTTTCACATTTACTGTGCCCATAAGGCATCAAATGTTATCTTCACCGTGAAGGATGACAATCCCATTGGTGCAACTTTGATTGGACGTGCATACGTACCTGTGGAAGACATCGTAGACGGGGAGGAAGTTGACAAATGGGTTCCAATCTTAGATGAAAATCAAAATCCTATTGAAGAGGAATCAAAGATTCATGTCAAACTTCAATACTTCAGTGTTACTAAAGATCGCAATTGGGGTCGTGGTATAAGAAGTCGTAAATTTCCTGGAGTCCCTTATACATATTACTCTCAGAGACAAGGTTGTAAGGTCTCTTTGTATCAAGATGCTCATGTACCCGATAATTTTATTCCTAAAATACCTCTCGCTGGAGGAAAAAATTATGCTCCCGCCAGATGTTGGGAAGATATTTTCGATGCCATAAAAAATGCCAAGCACATGATCTACATCACAGGATGGTCTGTTTATACAGAAATTGCCTTGGTAAGGGACTCCAGGAGACCAAAGCCTGGAGGAGACACCATGCTTGGTGAACTGCTTAAGAACAAAGCAAGTGAAGGGGTTAGAGTTCTTATGCTTGTCTGGGATGACAGAACATCAGTCGGTTTACTTAAAAAAGATGGTTTGATGGCTACTCACGATGAAGAAACTGAACGTTACTTCCAAGATACTGATGTGCACTGCGTGTTGTGCCCTCGTAATCCCGATGATGGTGGAAGCATTGTTCAAGATCTACAAATCTCTACCATGTTCACTCATCACCAGAAGATTGTGGTGGTGGATAGCCCAATGCCAAATGGAGATTCGGATAAGAGGAGAATTGTGAGTTTTGTTGGTGGCATTGATCTCTGTGATGGCAGGTATGACACACCCTTTCACTCCCTTTTCAGGACATTGGATACTGCACATCACGACGATTTCCATCAACCAAATTTTACTGGTGCATCAATAACAAAAGGTGGACCGAGGGAACCTTGGCATGATATCCATTCCCGACTTGAAGGGCCCATTGCCTGGGATGTTTTGTTCAATTTTGAGCAAAGGTGGAAGAAACAAGGTGGGAAGGATGTACTTCTGCAGCTACGTGATCTTGATGAAATAATTGTTCCTCCATCTCCTGTTATGTACCCAGACGACCATGACACCTGGAACGTTCAGTTGTTTAGATCAATAGATGGTGGGGCAGCTTTTGGCTTTCCTGAGACCCCTGAAGAAGCTGCTAGAGCTGGACTTGTCAGTGGGAAAGATAACATTATTGATAGAAGCATTCAAGATGCATACATTAATGCTATTCGACGGGCTAAGAATTTTATTTATATTGAAAACCAATATTTCCTTGGAAGTTGTTTTGGATGGTCTCCTGATAATATCAAGCCTGAGGATATTGGTGCCTTGCACTGTATCCCAAGGGAGCTTTCCCTCAAGATCGTCAGTAAGATTAAAGCAGGGGAAAGGTTCACTGTGTATGTAGTTGTTCCAATGTGGCCAGAAGGTCTACCAGAAAGTGGATCGGTTCAGGCAATATTAGATTGGCAGAAGAGGACACTAGAAATGATGTATAAAGATGTAATCGAGGCTCTTAGAGATCAAGGTATCGAGGAAGACCCTCGCAACTACTTGACATTCTTCTGTCTTGGCAACCGGGAAGTCAAGAGGTCGGGAGAATATGAACCTTCAGAAGCACCAGAGGAGGATTCTGATTATTTGAGAGCCCAGCAGGCCAGGCGTTTCATGATTTACGTCCACACCAAGATGATGATTGTTGATGATGAGTACATAATTGTTGGATCGGCAAACATCAACCAAAGATCCATGGATGGTGCAAGGGACTCCGAGATAGCAATGGGCGCTTACCAGCCCTATCATCTGTCAGCTCATGAACCTGCACGTGGTCAAGTTCACGGATTCCGAATGGCTCTATGGTATGAACATCTTGGTATGCTTGACGAAACTTTCCTTCGTCCAGAAAGTGAAGAATGTGTTGCAAAGGTTAACAGAATTGCTGATAAGTATTGGGATATGTATTCAAGTGAATCACTAGAAAGGGACTTGCCCGGTCACCTCCTCCGCTATCCGATTGGCATAACCAGTGAAGGGGAAGTGACAGAACTCCCAGGCTTTGAGTGCTTCCCCGACACCAAAGCTCGTATACTCGGAACCAAATCTGACTACCTCCCTCCCATCCTCACTACCTAA 2427 43.72 MEGTSLHGTLHATIYEIDRLHTGGSSNVFSMLRQNFEEAVGIGKGQTKLYATIDLEKARVGRTRILESDPSNPKWNESFHIYCAHKASNVIFTVKDDNPIGATLIGRAYVPVEDIVDGEEVDKWVPILDENQNPIEEESKIHVKLQYFSVTKDRNWGRGIRSRKFPGVPYTYYSQRQGCKVSLYQDAHVPDNFIPKIPLAGGKNYAPARCWEDIFDAIKNAKHMIYITGWSVYTEIALVRDSRRPKPGGDTMLGELLKNKASEGVRVLMLVWDDRTSVGLLKKDGLMATHDEETERYFQDTDVHCVLCPRNPDDGGSIVQDLQISTMFTHHQKIVVVDSPMPNGDSDKRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWKKQGGKDVLLQLRDLDEIIVPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEEAARAGLVSGKDNIIDRSIQDAYINAIRRAKNFIYIENQYFLGSCFGWSPDNIKPEDIGALHCIPRELSLKIVSKIKAGERFTVYVVVPMWPEGLPESGSVQAILDWQKRTLEMMYKDVIEALRDQGIEEDPRNYLTFFCLGNREVKRSGEYEPSEAPEEDSDYLRAQQARRFMIYVHTKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAYQPYHLSAHEPARGQVHGFRMALWYEHLGMLDETFLRPESEECVAKVNRIADKYWDMYSSESLERDLPGHLLRYPIGITSEGEVTELPGFECFPDTKARILGTKSDYLPPILTT* 809
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20516256 20519942 - CsaV3_7G032480.1 Csa07g02159 537722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02159 808 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Csa07g02159 808 SMART pld_4 654 681 IPR001736 GO:0003824
Csa07g02159 808 SMART pld_4 326 364 IPR001736 GO:0003824
Csa07g02159 808 SUPERFAMILY Phospholipase D/nuclease 151 436 - -
Csa07g02159 808 Gene3D Endonuclease Chain A 478 699 - -
Csa07g02159 808 Pfam Phospholipase D Active site motif 326 364 IPR001736 GO:0003824
Csa07g02159 808 Pfam Phospholipase D Active site motif 655 681 IPR001736 GO:0003824
Csa07g02159 808 PIRSF PLD_plant 1 808 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Csa07g02159 808 CDD C2_plant_PLD 6 148 - -
Csa07g02159 808 Pfam C2 domain 10 127 IPR000008 -
Csa07g02159 808 Pfam Phospholipase D C terminal 726 798 IPR024632 -
Csa07g02159 808 Gene3D C2 domain 7 157 IPR035892 -
Csa07g02159 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 654 681 IPR001736 GO:0003824
Csa07g02159 808 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 326 364 IPR001736 GO:0003824
Csa07g02159 808 SUPERFAMILY Phospholipase D/nuclease 442 738 - -
Csa07g02159 808 CDD PLDc_pPLDalpha_2 492 701 - -
Csa07g02159 808 ProSiteProfiles C2 domain profile. 1 125 IPR000008 -
Csa07g02159 808 SMART C2_3c 9 124 IPR000008 -
Csa07g02159 808 Gene3D Endonuclease Chain A 200 441 - -
Csa07g02159 808 PANTHER PHOSPHOLIPASE D 6 808 IPR015679 -
Csa07g02159 808 PANTHER PHOSPHOLIPASE D 6 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03367 Csa-Chr6:28038914 Csa07g02159 Csa-Chr7:20516256 0 dispersed
Csa03g04088 Csa-Chr3:35829902 Csa07g02159 Csa-Chr7:20516256 0 transposed
Csa06g00598 Csa-Chr6:5064048 Csa07g02159 Csa-Chr7:20516256 0 transposed
Csa02g02386 Csa-Chr2:21161532 Csa07g02159 Csa-Chr7:20516256 0 wgd
Csa04g00153 Csa-Chr4:863917 Csa07g02159 Csa-Chr7:20516256 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02159 K01115 - csv:101206113 1672.91