Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02163 ATGACATATTTTCCTGGTTTAAGTAATCAAAGAGACTCCATGTTAGGTGATCACAAACTTGGTTCTTCTTGCCAAGAACAACAGCCTCTTTGTTCTGGGAATTTGATGATGTTCATGAATCAGGACCCTTCTTGCAGAGATTATTCAGAGATTCTTTCTGGGGTTTCTTCAAATTATGTCGAAACTGTGGGAGATAGAAGTAATGTTGAAATGGCTTTCATTCCACCAGTTGTGGGAATTTTAGATGAATCAAATTTCCAATGTCAAGGTGTTTCACTTAGCCTTTCCACACACTCACCTTCTGTTGTGTCTATGTCTTCATTTCCTCACCAATATCAGACCCCTGCTATGGTTTCTTCATTCATTAATGCACCTCCTTCGATCTTGGAGAAGAGGCAGAATCCGAAACCTTGTATTTCTGATGTGAAAAATGGTATGTATGTAGCATTGGGTTCTGGTTATTCGATGTTGAATTCGGTATACATTGAAGCTGCACAACAGTTGCTTGATGAAATGGTTAGCATCCGGGAAGCTTTGAAAGAGCTGAAGTCTAAGAAACTGAAAGCTTCCAATGGTTTGGGTGTCGATTCCTGCAGAGAAAATGATGGGGGATCAAATGATCTGACTGGTGAGATGTGTGGCAATGCAAGGGAGGCATCAATCGCTAATCCGTTGAGTGATCTATCGCCTTCCGAACGTCAGGACTTGAAGAACAAAAACTCAAAGCTTCTGTCTCTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAACTGCAAATGTTAGCGTCGTCTTTCGACATGGTAGCAGGTCGAGGGGCTGCAGAGTTCTACACTTCACTCCCACACCAAACAATTTCGTGCCACTTTCGCCGCTTGCAAGATGCAATTAATGCACAGATTGAGGTCACCAGGAGAGCCTTGGGAGAGCAAGATTCTTTACATTCTGGTCAAGAAGGCATTCCCCGTCTCCGCTTTGTCGACCAACACCTCAGGCAACAGAGAGCCCTGCAGCATCTCGGTGTCACACCACATAGTTGGAGGCCTCAACGAGGGCTTCCTGAAAGCTCTGTGTCGATTCTTCGTGCTTGGCTCTTCGAACACTTCCTCCATCCATATCCCAAGGATTCAGAGAAACTTAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTCGCAAACTGGTTTATAAATGCACGTGTTCGGCTATGGAAACCAATGGTAGAGGAGATGTACAAAGAAGAATTTGGGGACTCTAACATTGATATCAAATCCTCACCAGAAAATGCATCCAAAGCATCATGGAACAATTCGCTATTCTCCGAAGATAGGGGAGGAGACGAGTTGCACGACAGCACAAAATCTGTAGCAAACAACGGTGAGCGAGTCCTCTACCGCCAGTGTGCTACCGACGATATGATCAACTCGAGTAACTTCACAATGGGAGGAGGAGATGTTTCACTTGCATTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGGATGTTTGGGAATAATAACAATAGAATGGTTGGTTCTGTGGAGCTTGAGGGACAGGATTTTCCATGTCTGGAACCAGAAAGGCATCATCAATGCAGACTCACCAGTTCAAATATGTTGCATGATTTTGTAGTTTAA 1647 43.9 MTYFPGLSNQRDSMLGDHKLGSSCQEQQPLCSGNLMMFMNQDPSCRDYSEILSGVSSNYVETVGDRSNVEMAFIPPVVGILDESNFQCQGVSLSLSTHSPSVVSMSSFPHQYQTPAMVSSFINAPPSILEKRQNPKPCISDVKNGMYVALGSGYSMLNSVYIEAAQQLLDEMVSIREALKELKSKKLKASNGLGVDSCRENDGGSNDLTGEMCGNAREASIANPLSDLSPSERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQMLASSFDMVAGRGAAEFYTSLPHQTISCHFRRLQDAINAQIEVTRRALGEQDSLHSGQEGIPRLRFVDQHLRQQRALQHLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNIDIKSSPENASKASWNNSLFSEDRGGDELHDSTKSVANNGERVLYRQCATDDMINSSNFTMGGGDVSLALELKHCEGDEFGMFGNNNNRMVGSVELEGQDFPCLEPERHHQCRLTSSNMLHDFVV* 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20537174 20540167 - CsaV3_7G032520.1 Csa07g02163 537726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02163 548 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 18 465 - -
Csa07g02163 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 18 465 - -
Csa07g02163 548 CDD homeodomain 349 410 IPR001356 GO:0003677
Csa07g02163 548 SUPERFAMILY Homeodomain-like 350 416 IPR009057 -
Csa07g02163 548 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677|GO:0006355
Csa07g02163 548 Pfam Associated with HOX 157 299 IPR006563 -
Csa07g02163 548 Gene3D - 346 423 - -
Csa07g02163 548 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677
Csa07g02163 548 Coils Coil 162 185 - -
Csa07g02163 548 SMART prehox3 150 301 IPR006563 -
Csa07g02163 548 SMART HOX_1 349 413 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01292 Csa-Chr2:12571370 Csa07g02163 Csa-Chr7:20537174 4.79E-112 dispersed
Csa06g02470 Csa-Chr6:21978294 Csa07g02163 Csa-Chr7:20537174 9.49E-82 dispersed
Csa06g02874 Csa-Chr6:25012164 Csa07g02163 Csa-Chr7:20537174 3.23E-74 dispersed
Csa07g02163 Csa-Chr7:20537174 Csa03g03494 Csa-Chr3:31283814 1.12E-83 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32375 PF07526 POX 4.20E-37 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02163 - - csv:101222692 1071.23