Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02205 ATGAGAAAAGAAGAAAATCATACCAGGGCTAATATTGGAGAATTCCATGGTAGAATTACACGTGCTCGGGCTGCTGCATTTACTGCATCAGCGCAGCTGCCTCCAAAAGTTCCTGCATATCAACATGAGAGACGGGTTGCCCGAGCTAATCTGAAAAGAGCCGCTTCTGAAGAAAATAGCTGCAATTCTATTGCTAAATCGTCTCGACCATGTAAAAGGAGGGCTGTACTTCAGGATGTCAGCAATATAGGCTGTGAACCTTCGTACTCAAATTGTTTCAATGCAGCTAAAATTGAGCCCAATAGTAGGAAGACAACAATCAGAAATTATCTCAAGAAGTCCAAAGGAGCCTCATCAGTTGGTGTAGTTAACTCCAAGGTTTCTCTAGGTCCTAAAAACAAAGGAGCTTCATCAGTTGGTGCCGCTTACTCCAAGCCTCTAGATCTTAGAACAGAAGGTGTACAAGCAAATGTCAAGTCAAAAGCTAAGTTGAAAGTTGAGCTTTCAAGTAATTCTGAAGACCACAAGACACATCATCGAGTAGAGGGTGTAAAGGAAGAGGTCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAGAGTCATTCAGAGTCTCAAAATTTTCAAAATAAAGAGAAAGGGTTGCTTCTGGGGACTAGAAGCAACCTGGACATTACAGACATTGATTGTAATGACAGAGATGCTCAGCTGTGCACCGTCTATGCCCAGGAAATCTATAACAATTTACGTGTTGCTGAGCTAACCAGAAGACCACGTCCCAGTTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCTGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTTTTTTTCATCGATTGGTTTCTCTCCCAAAATTACATCGAGAGACAAAAGCTTCAATTGTTGGGTATCTCTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCACATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACCCCAAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCCGAATTAACACTAGTTGACTATGGTTTCTTGAATTTTCTTCCATCAGTTATAGCTGCATCAGCTGTATTTCTATCCAAATGGACGTTGGATCAGTCAAGTCACCCATGGAATTCAACACTGGAATATTATACCTCATACAAAGCATCAGATCTGAAACAAACTGTTGTTGCTTTACAAGATTTACAGTTGAACACCAACGGTTGCCCTCTTAGTTCGATTCGCGTCAAGTATCGGCAAGAGAAGTTCAAAGCCGTTGCAACTTTGTCTTCCCCAAAATTACTTGATACGCTATTCTGA 1512 41.47 MRKEENHTRANIGEFHGRITRARAAAFTASAQLPPKVPAYQHERRVARANLKRAASEENSCNSIAKSSRPCKRRAVLQDVSNIGCEPSYSNCFNAAKIEPNSRKTTIRNYLKKSKGASSVGVVNSKVSLGPKNKGASSVGAAYSKPLDLRTEGVQANVKSKAKLKVELSSNSEDHKTHHRVEGVKEEVTSDFRDDNWRSQSHSESQNFQNKEKGLLLGTRSNLDITDIDCNDRDAQLCTVYAQEIYNNLRVAELTRRPRPSFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYIERQKLQLLGISCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVVALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSPKLLDTLF* 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20738344 20744894 - CsaV3_7G032940.1 Csa07g02205 537768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02205 503 CDD CYCLIN 373 460 IPR013763 -
Csa07g02205 503 SUPERFAMILY Cyclin-like 373 498 IPR036915 -
Csa07g02205 503 Gene3D - 244 492 - -
Csa07g02205 503 PANTHER CYCLIN-A2-4 51 503 - -
Csa07g02205 503 PANTHER CYCLINS 51 503 IPR039361 -
Csa07g02205 503 Pfam Cyclin, N-terminal domain 244 370 IPR006671 -
Csa07g02205 503 SMART cyclin_7 377 465 IPR013763 -
Csa07g02205 503 SMART cyclin_7 280 364 IPR013763 -
Csa07g02205 503 CDD CYCLIN 274 363 IPR013763 -
Csa07g02205 503 PIRSF Cyclin_A_B_D_E 36 502 IPR039361 -
Csa07g02205 503 Pfam Cyclin, C-terminal domain 373 495 IPR004367 -
Csa07g02205 503 Gene3D - 258 371 - -
Csa07g02205 503 SUPERFAMILY Cyclin-like 234 370 IPR036915 -
Csa07g02205 503 SMART Cyclin_C_2 373 496 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04360 Csa-Chr3:38061781 Csa07g02205 Csa-Chr7:20738344 3.05E-80 dispersed
Csa07g00705 Csa-Chr7:5032351 Csa07g02205 Csa-Chr7:20738344 1.87E-79 dispersed
Csa06g02128 Csa-Chr6:19014362 Csa07g02205 Csa-Chr7:20738344 6.49E-105 transposed
Csa02g02345 Csa-Chr2:20822634 Csa07g02205 Csa-Chr7:20738344 7.46E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02205 K06627 - csv:101222299 991.104