Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02213 ATGGAGATTAAAGAAAAGAAGAGAACTTCGACTATCTCCTCTCCATTAATGTCATCTTCTTCGATGGCTATCCTCCTGGTTTTTCTCTGTTTCATTTTTAACTGTCCAAACATCGCATTTGCTACCGGCCCCGGCGCTTCCTTCATTCCCAAAGATAATTTTCTCATTGACTGTGGTGCCAACAAGGAAGTTGGTGCACTCCCTGATGGGAGAGTTTTCAAAACTGATGAGCAATCCAAGCAATACTTAGATGCCAAGGATGACATTATAGCAACCGCTACGCCGGAGATGAAGGCACCGTCGCCAGTCGATTTGACAGCCAGAGTCTTCCTCCAAGAAGCTACTTACATTTTTCAAATGGCAGAGCCTGGATGGCATTGGCTACGCCTACATTTCCTTCCTGTTAAAAGCAATGACTTTGATCTCTTGCAAGCCAAATTTTCAGTAGCTACTGAAAATTATGTGTTGCTTCATAGCTTTAACATCAACAATGAATCCACATTTGTTCTCAAGGAGTTTCTCCTCAATATCACTGAACCAAAACTCTCAATCAAGTTCTTGCCTATGAGGAATTCAGCTGCTTTCATCAACGCCATCGAGGTCGTCTCGGCTCCTGTGGACTTGATTGCCGATTCCAACGTGGAGTTGTCTCCAGTTGGAACTATTGAGGGCCTGTCAAAATATGCATTTCAGACACTGTATAGGTTAAACATGGGAGGTCCTATAATTACTCCAAGAAATGACACTCTTGGGAGAACATGGGAGACAGATGAAGTTTATAGGACACCGAAAGCTGCTGGTAGTAGTGTGGTTGTTCAGACTAATAGCATCAAATACCAAGGAGGATTGAAAGAAACAGGCATGTTAATTGCTCCTCCAAGTGTGTATGCAAGTGCAGTTCAAATGGGAGATGCTCAAGTTAGTGTACCAAATTTCAATATCACGTGGAAATTTGAAGCAGATCCCTCATTTGGGTATCTAGTTCGCTTCCATTTTTGTGATATTGTCAGCAAAGTACTCAATGATATCTATTTCAATGTTTATGTAAATGGGAAAGCTGCTATAACCAACTTGGATTTGTCACACAAGCTAGGAAGTTTGGCAACTGCATATTACAAGGATGTTGTGGTTAATGCTTCCTTGATTGTAGATGGACTGACAGTTCAAATTAGTCCGGCTAATGTCGATACCGGTGATTCGAATGCCATTCTAAATGGTATAGAGGTATTGAAAATAAGCAACTCTGTTAATAGTTTGGATGGAGAGTTTGGAGTGGATGGTAAGTCTGCAAATGGATCTAACCGTGGGACAGTTGCTGCCGTTGGGTTTGCAATGATGTTTGGAGCGTTTGTTGGGCTCGGCGCGATGGTGATGAAATGGCATAAAAGGCCTCAGGATTGGCAGAAGAGGAACAGTTTCTCTTCTTGGTTGCTTCCTGTACATGCTGGTGATTCAAGCTTTATGACAAGCAAGACTTCATATGGATCACATAAGACCAACATTTATTCCTCTACTTTAGGCCTTGGTAGGTTCTTTACTTTGGCAGAACTTCAAGAAGCCACCAAGAACTTTGATCCCAATTCAATAATTGGTGTTGGTGGGTTTGGAAATGTGTACCTTGGAGTGATTGATGAAGGGACTAAAGTAGCAGTTAAGAGAGGAAATCCACAATCTGAACAAGGCATAACAGAATTCCAAACAGAAATTCAAATGCTTTCAAAACTTAGACATAGGCATTTGGTTTCTTTGATTGGGTACTGTGATGAAAATGCTGAAATGATCTTGGTATATGAGTTCATGTCAAATGGTCCATTCAGAGATCACTTATATGGAAAGGACATATCTCCATTGTCATGGAAGCAAAGGCTGGAGATTTGTATCGGGGCAGCTCGAGGTCTCCATTACCTGCACACAGGAACAGCACAAGGAATCATTCACCGTGACGTCAAAACAACCAACATTTTACTCGACGAAAACTTCACCGCGAAAGTTGCCGATTTCGGATTGTCGAAGGATGCTCCAATGGGGCAAGGACATGTCAGTACAGCAGTGAAAGGAAGTTTTGGATATTTGGATCCAGAGTACTTTAGGAGACAACAGTTAACAGAAAAATCAGATGTTTATTCCTTTGGAGTTGTTCTGCTTGAGGCTTTGTGTGCAAGGCCAGCAATCAACCCATCTTTGACAAGAGAACAAGTGAACTTAGCTGATTGGGCAATGCAGTGTAAGAAAAAAGGGTGTTTGGAAAAGATAATGGATCCACTTCTAGTTGGAGCTATAAATCCTGAGTCCATGAAAAAGTTTGCAGAAGCATCAGAGAAATGTCTAGCTGAACATGGTGTAGACAGGCCAAGCATGGGGGATGTATTGTGGAATTTGGAGTATGCATTACAACTACAAGAAGCTTTCTCACAAGGCAAAACTGAAGACGAAAACAAAGCTGCAAGTACGACGGCAACTGTCACCCCGGCCACACCTCCCGCTGTCGAAGCTTCGACAAATGCATCGAACTCCGACAACCGCTCTGTCGTGCAGCCAGAACAGAATAGGCAACCAGCAGAGGTTCAAGCCATTGATGATCATTCAGGAAGTGCAATGTTTGCTCATTTTTCTAATCTCAATGGTAGATGA 2631 42.38 MEIKEKKRTSTISSPLMSSSSMAILLVFLCFIFNCPNIAFATGPGASFIPKDNFLIDCGANKEVGALPDGRVFKTDEQSKQYLDAKDDIIATATPEMKAPSPVDLTARVFLQEATYIFQMAEPGWHWLRLHFLPVKSNDFDLLQAKFSVATENYVLLHSFNINNESTFVLKEFLLNITEPKLSIKFLPMRNSAAFINAIEVVSAPVDLIADSNVELSPVGTIEGLSKYAFQTLYRLNMGGPIITPRNDTLGRTWETDEVYRTPKAAGSSVVVQTNSIKYQGGLKETGMLIAPPSVYASAVQMGDAQVSVPNFNITWKFEADPSFGYLVRFHFCDIVSKVLNDIYFNVYVNGKAAITNLDLSHKLGSLATAYYKDVVVNASLIVDGLTVQISPANVDTGDSNAILNGIEVLKISNSVNSLDGEFGVDGKSANGSNRGTVAAVGFAMMFGAFVGLGAMVMKWHKRPQDWQKRNSFSSWLLPVHAGDSSFMTSKTSYGSHKTNIYSSTLGLGRFFTLAELQEATKNFDPNSIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEFMSNGPFRDHLYGKDISPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVADFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPSLTREQVNLADWAMQCKKKGCLEKIMDPLLVGAINPESMKKFAEASEKCLAEHGVDRPSMGDVLWNLEYALQLQEAFSQGKTEDENKAASTTATVTPATPPAVEASTNASNSDNRSVVQPEQNRQPAEVQAIDDHSGSAMFAHFSNLNGR* 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20798979 20802833 - CsaV3_7G033020.1 Csa07g02213 537776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02213 876 Pfam Malectin-like domain 56 411 IPR024788 -
Csa07g02213 876 ProSitePatterns Protein kinases ATP-binding region signature. 530 552 IPR017441 GO:0005524
Csa07g02213 876 PANTHER OS07G0166700 PROTEIN 38 852 IPR045272 GO:0004714|GO:0006468
Csa07g02213 876 SUPERFAMILY Protein kinase-like (PK-like) 499 794 IPR011009 -
Csa07g02213 876 MobiDBLite consensus disorder prediction 804 855 - -
Csa07g02213 876 Pfam Protein tyrosine and serine/threonine kinase 529 786 IPR001245 GO:0004672|GO:0006468
Csa07g02213 876 MobiDBLite consensus disorder prediction 804 852 - -
Csa07g02213 876 Gene3D Phosphorylase Kinase; domain 1 485 599 - -
Csa07g02213 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 644 656 IPR008271 GO:0004672|GO:0006468
Csa07g02213 876 ProSiteProfiles Protein kinase domain profile. 524 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02213 876 CDD STKc_IRAK 530 794 - -
Csa07g02213 876 PANTHER BNAC03G60370D PROTEIN 38 852 - -
Csa07g02213 876 Gene3D - 53 207 - -
Csa07g02213 876 Gene3D - 228 414 - -
Csa07g02213 876 Gene3D Transferase(Phosphotransferase) domain 1 600 822 - -
Csa07g02213 876 SMART serkin_6 524 796 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00257 Csa-Chr1:1601882 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa03g04139 Csa-Chr3:36282254 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa05g00654 Csa-Chr5:4358095 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa06g02978 Csa-Chr6:25738216 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa06g03855 Csa-Chr6:30576449 Csa07g02213 Csa-Chr7:20798979 0 dispersed
Csa07g02213 Csa-Chr7:20798979 Csa06g01709 Csa-Chr6:15028080 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78511 PF12819 Malectin_like 4.90E-36 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02213 - - csv:101220967 1716.82