Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02237 ATGCAACAACAATCGATATCTGGTTCTGCTTTGAAAATTTTTCGGAATATCATTGTTAACGATGGCCCTGCTGGTCTTTTCAGAGGCATGACTGCTCCTTTGGCCTCTGTCACTTTTCAGAACGCCGCCGTGTTTCAGATCTATGCCGTTCTTTCTCGGGCATTCAACTCCTCCTCTCAATCCAAAATTGGAGACCCTCCAAGTTATAAGGCTGTGGCATTTGCAGGAGTTGGTACTGGAGCTCTTCAGAGCCTCATCTTGTCGCCGGTGGAGCTTGTGAAGATTCGCCTGCAATTGCAGAGTTCAAGCCATGCAATTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTCATAGAGGTCCATTGAGCGTCGCCAAGAGCATCTACAAAACAGAAGGATTGAGAGGGATTTACAAAGGACTTACCATAACCATACTGAGAGATGCACCTGCACATGGCATCTATTTCTGGACATACGAGTGCATGAGAGAGCAATTTCATCCTGGCTGCCGAAAGACCAGCCAAGAGAGCGTCGGAACAATGCTGGTCGCCGGAGGGCTTGCTGGAGTTGCTAGCTGGGTTTTTTGTTATCCACTGGATGTATTGAAGACAAGAATTCAGGGTCAAACAAAAAGTTCATCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTAAGAGAAGAGGGTTATAGAGTGCTCTGGCGTGGACTAGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTGCTGCTTATGAGATAACTTTGAGGTGTTTGTTTAGCAATGGAAGCAATCATACACAGCAATATGATTGCCCAAATTTGTCACAATCACAGAGTCCTAAAAAGAAATGA 876 44.75 MQQQSISGSALKIFRNIIVNDGPAGLFRGMTAPLASVTFQNAAVFQIYAVLSRAFNSSSQSKIGDPPSYKAVAFAGVGTGALQSLILSPVELVKIRLQLQSSSHAISSSSSSSSSSSSHRGPLSVAKSIYKTEGLRGIYKGLTITILRDAPAHGIYFWTYECMREQFHPGCRKTSQESVGTMLVAGGLAGVASWVFCYPLDVLKTRIQGQTKSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFSNGSNHTQQYDCPNLSQSQSPKKK* 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 20987025 20989039 + CsaV3_7G033250.1 Csa07g02237 537800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02237 291 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 2 268 - -
Csa07g02237 291 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 2 268 - -
Csa07g02237 291 Gene3D Mitochondrial carrier domain 1 279 IPR023395 -
Csa07g02237 291 Pfam Mitochondrial carrier protein 73 167 IPR018108 -
Csa07g02237 291 Pfam Mitochondrial carrier protein 177 268 IPR018108 -
Csa07g02237 291 Pfam Mitochondrial carrier protein 3 58 IPR018108 -
Csa07g02237 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 67 166 IPR018108 -
Csa07g02237 291 ProSiteProfiles Solute carrier (Solcar) repeat profile. 177 265 IPR018108 -
Csa07g02237 291 SUPERFAMILY Mitochondrial carrier 6 260 IPR023395 -
Csa07g02237 291 PRINTS Mitochondrial carrier protein signature 238 256 IPR002067 GO:0055085
Csa07g02237 291 PRINTS Mitochondrial carrier protein signature 141 161 IPR002067 GO:0055085
Csa07g02237 291 PRINTS Mitochondrial carrier protein signature 85 99 IPR002067 GO:0055085
Csa07g02237 291 PRINTS Mitochondrial carrier protein signature 192 210 IPR002067 GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02399 Csa07g02237 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04615 Csa-Chr3:40099548 Csa07g02237 Csa-Chr7:20987025 2.20E-10 dispersed
Csa03g04616 Csa-Chr3:40103772 Csa07g02237 Csa-Chr7:20987025 5.15E-09 dispersed
Csa07g02237 Csa-Chr7:20987025 Csa02g02378 Csa-Chr2:21122110 1.38E-19 dispersed
Csa03g02399 Csa-Chr3:21994409 Csa07g02237 Csa-Chr7:20987025 3.62E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02237 K15109 - csv:101222165 550.436