Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02263 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTACGCTCTTTCAAGGCTTATCTAGCTGAGTTCATCTCCACCTTACTCTTCGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCTGGAGCTTTAGATCCAGCAGGGCTGGTTGGGGTGGCAGTTTGCCATGGATTTGCTCTGTTTGTTGCTGTCTCTGTCGGAGCTAACATCTCCGGTGGCCACGTGAACCCAGCGGTGACGTTCGGGCTTCTTCTTGGAGATCAAATCAGCTTAATTACCACCATTTTCTACTGGATTGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACTGGCGGCCTCGCGGTTCCGGTCCACAGCGTCGCCGCCGGCATCGGAGCGACGGAAGGGGTTGTGACGGAGATTGTCACCACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATTGCCATCGGTTTAATCGTCGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGTGGATCGATGAACCCGGCCCGATCTTTCGGCCCAGCGGTAGTCAGTGGCGATTTTCACGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAACGATTTCTAA 747 53.28 MAWFTIGSFQDSLSLRSFKAYLAEFISTLLFVFAGVGSAIAYNKITSSGALDPAGLVGVAVCHGFALFVAVSVGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGIGATEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGLIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF* 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21111287 21113873 + CsaV3_7G033520.1 Csa07g02263 537826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02263 248 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Csa07g02263 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Csa07g02263 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Csa07g02263 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Csa07g02263 248 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Csa07g02263 248 PANTHER MIP PROTEIN 1 248 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g02273 Csa-Chr2:20340077 Csa07g02263 Csa-Chr7:21111287 2.66E-83 dispersed
Csa05g00429 Csa-Chr5:2845610 Csa07g02263 Csa-Chr7:21111287 1.21E-124 dispersed
Csa05g00519 Csa-Chr5:3336038 Csa07g02263 Csa-Chr7:21111287 2.45E-64 dispersed
Csa05g01810 Csa-Chr5:21392695 Csa07g02263 Csa-Chr7:21111287 3.74E-83 dispersed
Csa07g02263 Csa-Chr7:21111287 Csa06g02566 Csa-Chr6:22687696 3.69E-44 dispersed
Csa07g02263 Csa-Chr7:21111287 Csa06g02624 Csa-Chr6:23064934 2.47E-99 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02263 K09873 - csv:101218611 486.108