Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02268 ATGGCAAAACCAAAGAATTCAAATCCCCAGAACAAAACCACGTCCTCTCTTCCCACTACTCCGGCCAGCAAAAGACCAAGAGACTGCAACAAACACCCTGTTTTCCGAGGCGTACGGAAGCGGAGCTGGGGGAAATGGGTATCGGAAATCCGGCAACCCCGTAAGAATTCCCGAATTTGGCTCGGCACTTTTCCAACTCCGGAGATGGCGGCACGTGCTCACGATGCCGCCGCTTTATGCATCAAAGGCGACTCTGCCATCCTCAATTACCCTGAACTTGCTGACATTTTGCCTAGGCCGGCGTCGCTCATGCCGCAGGATGTTCAGGCTGCCGCCGCCAAAGCTGCAGCGATGGTCCATTTGAATTCCGCTGGATTGCCGTCCGAGGAGGAGGAGCTGAGTGAGATCGTCGAGTTGCCGAATATCGAAGACGATTTTTGTACTGAGTCGTTGAACGAGTTCAAATTGGTTACGGAGTCATGGGAATGGTGGGAGTCCGTGGCAATGCCGTTGGCGGCGGAATTCGGTTCCGGTTGTATGCTTTTGGAATTCAATAATTTCCAAAACAATGACTAG 576 52.43 MAKPKNSNPQNKTTSSLPTTPASKRPRDCNKHPVFRGVRKRSWGKWVSEIRQPRKNSRIWLGTFPTPEMAARAHDAAALCIKGDSAILNYPELADILPRPASLMPQDVQAAAAKAAAMVHLNSAGLPSEEEELSEIVELPNIEDDFCTESLNEFKLVTESWEWWESVAMPLAAEFGSGCMLLEFNNFQNND* 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21132427 21133279 + CsaV3_7G033570.1 Csa07g02268 537831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02268 191 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 165 - -
Csa07g02268 191 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Csa07g02268 191 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Csa07g02268 191 MobiDBLite consensus disorder prediction 1 32 - -
Csa07g02268 191 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Csa07g02268 191 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Csa07g02268 191 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 165 - -
Csa07g02268 191 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Csa07g02268 191 CDD AP2 35 93 IPR001471 GO:0003700|GO:0006355
Csa07g02268 191 MobiDBLite consensus disorder prediction 1 23 - -
Csa07g02268 191 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Csa07g02268 191 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02268 Csa-Chr7:21132427 Csa03g00257 Csa-Chr3:2069964 2.97E-36 dispersed
Csa03g02368 Csa-Chr3:21466638 Csa07g02268 Csa-Chr7:21132427 1.96E-43 transposed
Csa02g00103 Csa-Chr2:717915 Csa07g02268 Csa-Chr7:21132427 2.18E-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32382 PF00847 AP2 6.00E-15 CL0081 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02268 K09286 - csv:101217361 359.762